| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-10 11:35 -0400 (Fri, 10 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 alpha (2026-04-05 r89794) | 4917 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-26 r89717) -- "Unsuffered Consequences" | 4629 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1534/2388 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OpenStats 1.23.0 (landing page) Marina Kan
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for OpenStats in R Universe. | ||||||||||||||
|
To the developers/maintainers of the OpenStats package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OpenStats.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: OpenStats |
| Version: 1.23.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings OpenStats_1.23.0.tar.gz |
| StartedAt: 2026-04-10 02:43:24 -0400 (Fri, 10 Apr 2026) |
| EndedAt: 2026-04-10 02:45:19 -0400 (Fri, 10 Apr 2026) |
| EllapsedTime: 115.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: OpenStats.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings OpenStats_1.23.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/OpenStats.Rcheck’
* using R version 4.6.0 alpha (2026-04-05 r89794)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-04-10 06:43:25 UTC
* checking for file ‘OpenStats/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OpenStats’ version ‘1.23.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OpenStats’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) OpenStatsAnalysis.Rd:108: Escaped LaTeX specials: \& \& \& \& \&
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.23-bioc/meat/OpenStats.Rcheck/00check.log’
for details.
OpenStats.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL OpenStats ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘OpenStats’ ... ** this is package ‘OpenStats’ version ‘1.23.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OpenStats)
OpenStats.Rcheck/OpenStats-Ex.timings
| name | user | system | elapsed | |
| OpenStatsAnalysis | 1.717 | 0.054 | 1.774 | |
| OpenStatsBuilder | 0 | 0 | 0 | |
| OpenStatsComplementarySplit | 1.248 | 0.051 | 1.298 | |
| OpenStatsList | 0.987 | 0.068 | 1.094 | |
| OpenStatsReport | 1.800 | 0.152 | 1.958 | |
| plot.OpenStats | 0.567 | 0.049 | 0.653 | |
| plot.OpenStatsComplementarySplit | 1.372 | 0.139 | 1.516 | |
| plot.OpenStatsFE | 0.067 | 0.013 | 0.080 | |
| plot.OpenStatsMM | 0.501 | 0.030 | 0.533 | |
| plot.OpenStatsRR | 0.345 | 0.026 | 0.372 | |
| print.OpenStats | 0.537 | 0.022 | 0.577 | |
| print.OpenStatsComplementarySplit | 1.355 | 0.131 | 1.490 | |
| print.OpenStatsFE | 0.068 | 0.004 | 0.071 | |
| print.OpenStatsMM | 0.484 | 0.034 | 0.518 | |
| print.OpenStatsRR | 0.254 | 0.019 | 0.273 | |
| summary.OpenStats | 0.571 | 0.046 | 0.729 | |
| summary.OpenStatsComplementarySplit | 1.409 | 0.070 | 1.483 | |
| summary.OpenStatsFE | 0.075 | 0.006 | 0.081 | |
| summary.OpenStatsMM | 0.482 | 0.027 | 0.510 | |
| summary.OpenStatsRR | 0.260 | 0.014 | 0.274 | |