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This page was generated on 2026-03-21 11:35 -0400 (Sat, 21 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" 4866
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" 4545
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1744/2368HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcpi 1.47.0  (landing page)
Nan Xiao
Snapshot Date: 2026-03-20 13:40 -0400 (Fri, 20 Mar 2026)
git_url: https://git.bioconductor.org/packages/Rcpi
git_branch: devel
git_last_commit: d010cbe
git_last_commit_date: 2025-10-29 10:18:37 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for Rcpi in R Universe.


CHECK results for Rcpi on kjohnson3

To the developers/maintainers of the Rcpi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rcpi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rcpi
Version: 1.47.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
StartedAt: 2026-03-21 00:48:01 -0400 (Sat, 21 Mar 2026)
EndedAt: 2026-03-21 00:49:04 -0400 (Sat, 21 Mar 2026)
EllapsedTime: 62.8 seconds
RetCode: 0
Status:   OK  
CheckDir: Rcpi.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/Rcpi.Rcheck’
* using R Under development (unstable) (2026-03-20 r89666)
* using platform: aarch64-apple-darwin23
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.3.19.1)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-03-21 04:48:02 UTC
* using option ‘--no-vignettes’
* checking for file ‘Rcpi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rcpi’ version ‘1.47.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rcpi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Rcpi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rcpi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘Rcpi’ ...
** this is package ‘Rcpi’ version ‘1.47.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpi)

Tests output

Rcpi.Rcheck/tests/testthat.Rout


R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Rcpi)

> 
> test_check("Rcpi")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
> 
> proc.time()
   user  system elapsed 
  3.011   0.306   2.860 

Example timings

Rcpi.Rcheck/Rcpi-Ex.timings

nameusersystemelapsed
AA2DACOR0.0000.0010.001
AA3DMoRSE0.0010.0010.001
AAACF0.0000.0000.001
AABLOSUM1000.0000.0010.001
AABLOSUM450.0010.0010.001
AABLOSUM50000
AABLOSUM620.0000.0000.001
AABLOSUM800.0000.0010.001
AABurden0.0000.0000.001
AACPSA0.0010.0000.001
AAConn0.0000.0010.001
AAConst000
AADescAll0.0010.0000.001
AAEdgeAdj0.0000.0010.001
AAEigIdx0.0000.0010.001
AAFGC0.0000.0000.001
AAGETAWAY0.0000.0010.001
AAGeom0.0000.0000.001
AAInfo000
AAMOE2D000
AAMOE3D0.0010.0010.001
AAMetaInfo0.0000.0000.001
AAMolProp0.0000.0010.001
AAPAM1200.0010.0000.001
AAPAM2500.0000.0010.001
AAPAM300.0000.0000.001
AAPAM400.0010.0010.001
AAPAM70000
AARDF0.0000.0010.000
AARandic0.0010.0000.001
AATopo000
AATopoChg0.0000.0000.001
AAWHIM0.0010.0000.001
AAWalk0.0000.0010.001
AAindex0.0000.0000.001
OptAA3d000
acc0.0020.0020.006
calcDrugFPSim000
calcDrugMCSSim0.0070.0020.010
calcParProtGOSim000
calcParProtSeqSim0.0020.0010.004
calcTwoProtGOSim000
calcTwoProtSeqSim0.0010.0010.001
checkProt0.0000.0000.001
convMolFormat0.0000.0010.001
extractDrugAIO000
extractDrugALOGP0.0010.0000.000
extractDrugAminoAcidCount0.0000.0000.001
extractDrugApol0.0000.0010.000
extractDrugAromaticAtomsCount0.0010.0000.000
extractDrugAromaticBondsCount0.0000.0000.001
extractDrugAtomCount000
extractDrugAutocorrelationCharge0.0010.0010.001
extractDrugAutocorrelationMass0.0000.0000.001
extractDrugAutocorrelationPolarizability000
extractDrugBCUT0.0000.0010.000
extractDrugBPol0.0000.0000.001
extractDrugBondCount0.0010.0000.001
extractDrugCPSA0.0000.0010.001
extractDrugCarbonTypes000
extractDrugChiChain0.0010.0000.000
extractDrugChiCluster0.0000.0010.001
extractDrugChiPath0.0000.0000.001
extractDrugChiPathCluster0.0010.0000.000
extractDrugDescOB0.0020.0010.003
extractDrugECI0.0000.0000.001
extractDrugEstate0.0000.0000.001
extractDrugEstateComplete000
extractDrugExtended000
extractDrugExtendedComplete0.0010.0000.000
extractDrugFMF0.0000.0010.001
extractDrugFragmentComplexity0.0000.0000.001
extractDrugGraph0.0010.0000.001
extractDrugGraphComplete0.0000.0000.001
extractDrugGravitationalIndex000
extractDrugHBondAcceptorCount0.0010.0000.001
extractDrugHBondDonorCount0.0000.0010.001
extractDrugHybridization000
extractDrugHybridizationComplete000
extractDrugHybridizationRatio0.0000.0010.000
extractDrugIPMolecularLearning0.0010.0000.001
extractDrugKR000
extractDrugKRComplete0.0000.0010.000
extractDrugKappaShapeIndices0.0010.0000.000
extractDrugKierHallSmarts0.0000.0000.001
extractDrugLargestChain000
extractDrugLargestPiSystem0.0010.0010.000
extractDrugLengthOverBreadth0.0000.0000.001
extractDrugLongestAliphaticChain000
extractDrugMACCS0.0000.0010.000
extractDrugMACCSComplete0.0000.0000.001
extractDrugMDE0.0010.0000.001
extractDrugMannholdLogP000
extractDrugMomentOfInertia0.0000.0000.001
extractDrugOBFP20.0040.0000.005
extractDrugOBFP30.0020.0000.002
extractDrugOBFP40.0360.0020.042
extractDrugOBMACCS0.0020.0000.003
extractDrugPetitjeanNumber0.0010.0010.000
extractDrugPetitjeanShapeIndex000
extractDrugPubChem000
extractDrugPubChemComplete0.0010.0000.001
extractDrugRotatableBondsCount000
extractDrugRuleOfFive000
extractDrugShortestPath0.0000.0000.001
extractDrugShortestPathComplete0.0000.0010.001
extractDrugStandard0.0010.0000.000
extractDrugStandardComplete000
extractDrugTPSA0.0000.0000.001
extractDrugVABC0.0010.0000.001
extractDrugVAdjMa0.0000.0000.001
extractDrugWHIM000
extractDrugWeight0.0000.0010.001
extractDrugWeightedPath0.0000.0000.001
extractDrugWienerNumbers0.0010.0000.000
extractDrugXLogP000
extractDrugZagrebIndex0.0000.0000.001
extractPCMBLOSUM0.0050.0010.006
extractPCMDescScales0.0040.0010.005
extractPCMFAScales0.0080.0010.010
extractPCMMDSScales0.0030.0010.004
extractPCMPropScales0.0040.0010.005
extractPCMScales0.0050.0010.007
extractProtAAC0.0010.0000.001
extractProtAPAAC0.2530.0120.295
extractProtCTDC0.0010.0000.002
extractProtCTDD0.0020.0010.003
extractProtCTDT0.0020.0000.002
extractProtCTriad0.0290.0040.040
extractProtDC0.0010.0020.011
extractProtGeary0.0430.0030.049
extractProtMoran0.0480.0060.057
extractProtMoreauBroto0.0330.0040.037
extractProtPAAC0.1330.0030.143
extractProtPSSM0.0010.0000.000
extractProtPSSMAcc000
extractProtPSSMFeature0.0010.0000.000
extractProtQSO0.2720.0070.316
extractProtSOCN0.2550.0040.291
extractProtTC0.0140.0420.067
getCPI0.0010.0010.002
getDrug000
getFASTAFromKEGG000
getFASTAFromUniProt000
getMolFromCAS000
getMolFromChEMBL000
getMolFromDrugBank000
getMolFromKEGG000
getMolFromPubChem000
getPDBFromRCSBPDB0.0000.0000.001
getPPI0.0010.0010.002
getProt0.0000.0000.001
getSeqFromKEGG000
getSeqFromRCSBPDB0.0010.0000.001
getSeqFromUniProt000
getSmiFromChEMBL000
getSmiFromDrugBank0.0000.0000.001
getSmiFromKEGG000
getSmiFromPubChem000
readFASTA0.0010.0010.002
readMolFromSDF0.0020.0010.002
readMolFromSmi0.0000.0000.001
readPDB0.2820.0040.313
searchDrug0.0000.0000.001
segProt0.0010.0010.001