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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data VanillaICE
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* checking for file ‘VanillaICE/DESCRIPTION’ ... OK
* preparing ‘VanillaICE’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘VanillaICE.Rnw’ using Sweave
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: ‘generics’

The following objects are masked from ‘package:base’:

    as.difftime, as.factor, as.ordered, intersect, is.element,
    setdiff, setequal, union


Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm,
    append, as.data.frame, basename, cbind, colnames, dirname,
    do.call, duplicated, eval, evalq, get, grep, grepl,
    is.unsorted, lapply, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames,
    sapply, saveRDS, table, tapply, unique, unsplit,
    which.max, which.min

Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following object is masked from ‘package:utils’:

    findMatches

The following objects are masked from ‘package:base’:

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: Seqinfo
Loading required package: SummarizedExperiment
Loading required package: MatrixGenerics
Loading required package: matrixStats

Attaching package: ‘MatrixGenerics’

The following objects are masked from ‘package:matrixStats’:

    colAlls, colAnyNAs, colAnys, colAvgsPerRowSet,
    colCollapse, colCounts, colCummaxs, colCummins,
    colCumprods, colCumsums, colDiffs, colIQRDiffs, colIQRs,
    colLogSumExps, colMadDiffs, colMads, colMaxs, colMeans2,
    colMedians, colMins, colOrderStats, colProds,
    colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
    colSums2, colTabulates, colVarDiffs, colVars,
    colWeightedMads, colWeightedMeans, colWeightedMedians,
    colWeightedSds, colWeightedVars, rowAlls, rowAnyNAs,
    rowAnys, rowAvgsPerColSet, rowCollapse, rowCounts,
    rowCummaxs, rowCummins, rowCumprods, rowCumsums, rowDiffs,
    rowIQRDiffs, rowIQRs, rowLogSumExps, rowMadDiffs, rowMads,
    rowMaxs, rowMeans2, rowMedians, rowMins, rowOrderStats,
    rowProds, rowQuantiles, rowRanges, rowRanks, rowSdDiffs,
    rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages
    'citation("pkgname")'.


Attaching package: ‘Biobase’

The following object is masked from ‘package:MatrixGenerics’:

    rowMedians

The following objects are masked from ‘package:matrixStats’:

    anyMissing, rowMedians

No methods found in package ‘oligoClasses’ for request: ‘mean’ when loading ‘crlmm’
Welcome to VanillaICE version 1.73.0
Loading required package: data.table

Attaching package: ‘data.table’

The following object is masked from ‘package:SummarizedExperiment’:

    shift

The following object is masked from ‘package:GenomicRanges’:

    shift

The following object is masked from ‘package:IRanges’:

    shift

The following objects are masked from ‘package:S4Vectors’:

    first, second

Loading required package: BSgenome
Loading required package: GenomeInfoDb
Loading required package: Biostrings
Loading required package: XVector

Attaching package: ‘Biostrings’

The following object is masked from ‘package:base’:

    strsplit

Loading required package: BiocIO
Loading required package: rtracklayer
Error: package or namespace load failed for ‘rtracklayer’:
 class "Seqinfo" is not exported by 'namespace:GenomeInfoDb'

Error: processing vignette 'VanillaICE.Rnw' failed with diagnostics:
 chunk 5 (label = seqinfo) 
Error : package ‘rtracklayer’ could not be loaded

--- failed re-building ‘VanillaICE.Rnw’

--- re-building ‘crlmmDownstream.Rnw’ using Sweave
Welcome to oligoClasses version 1.73.0
Loading required package: preprocessCore
Welcome to crlmm version 1.69.0

Attaching package: ‘crlmm’

The following object is masked from ‘package:VanillaICE’:

    genotypes

--- finished re-building ‘crlmmDownstream.Rnw’

SUMMARY: processing the following file failed:
  ‘VanillaICE.Rnw’

Error: Vignette re-building failed.
Execution halted