| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-02-06 11:32 -0500 (Fri, 06 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4857 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 289/2347 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cBioPortalData 2.23.4 (landing page) Marcel Ramos
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for cBioPortalData in R Universe. | ||||||||||||||
|
To the developers/maintainers of the cBioPortalData package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cBioPortalData.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: cBioPortalData |
| Version: 2.23.4 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data cBioPortalData |
| StartedAt: 2026-02-05 16:39:43 -0500 (Thu, 05 Feb 2026) |
| EndedAt: 2026-02-05 16:40:41 -0500 (Thu, 05 Feb 2026) |
| EllapsedTime: 58.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data cBioPortalData
###
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* checking for file ‘cBioPortalData/DESCRIPTION’ ... OK
* preparing ‘cBioPortalData’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘cBioPortalData.Rmd’ using rmarkdown
<html>
<head><title>429 Too Many Requests</title></head>
<body>
<center><h1>429 Too Many Requests</h1></center>
<hr><center>nginx</center>
</body>
</html>
Quitting from cBioPortalData.Rmd:85-89 [get_studies]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! '.service_get_api_file' failed:
Too Many Requests (RFC 6585) (HTTP 429).
---
Backtrace:
▆
1. └─cBioPortalData::cBioPortal()
2. ├─base::withCallingHandlers(...)
3. └─AnVIL::Service(...)
4. └─AnVIL:::.service_get_api_file(api_reference_url, api_reference_headers)
5. └─AnVILBase::avstop_for_status(response, ".service_get_api_file")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'cBioPortalData.Rmd' failed with diagnostics:
'.service_get_api_file' failed:
Too Many Requests (RFC 6585) (HTTP 429).
--- failed re-building ‘cBioPortalData.Rmd’
--- re-building ‘cBioPortalDataErrors.Rmd’ using rmarkdown
--- finished re-building ‘cBioPortalDataErrors.Rmd’
--- re-building ‘cBioPortalRClient.Rmd’ using rmarkdown
<html>
<head><title>429 Too Many Requests</title></head>
<body>
<center><h1>429 Too Many Requests</h1></center>
<hr><center>nginx</center>
</body>
</html>
Quitting from cBioPortalRClient.Rmd:73-75 [cbioportal_client]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! '.service_get_api_file' failed:
Too Many Requests (RFC 6585) (HTTP 429).
---
Backtrace:
▆
1. └─cBioPortalData::cBioPortal()
2. ├─base::withCallingHandlers(...)
3. └─AnVIL::Service(...)
4. └─AnVIL:::.service_get_api_file(api_reference_url, api_reference_headers)
5. └─AnVILBase::avstop_for_status(response, ".service_get_api_file")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'cBioPortalRClient.Rmd' failed with diagnostics:
'.service_get_api_file' failed:
Too Many Requests (RFC 6585) (HTTP 429).
--- failed re-building ‘cBioPortalRClient.Rmd’
--- re-building ‘cgdsrMigration.Rmd’ using rmarkdown
<html>
<head><title>429 Too Many Requests</title></head>
<body>
<center><h1>429 Too Many Requests</h1></center>
<hr><center>nginx</center>
</body>
</html>
Quitting from cgdsrMigration.Rmd:41-48 [cbioportal_setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! '.service_get_api_file' failed:
Too Many Requests (RFC 6585) (HTTP 429).
---
Backtrace:
▆
1. └─cBioPortalData::cBioPortal(...)
2. ├─base::withCallingHandlers(...)
3. └─AnVIL::Service(...)
4. └─AnVIL:::.service_get_api_file(api_reference_url, api_reference_headers)
5. └─AnVILBase::avstop_for_status(response, ".service_get_api_file")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'cgdsrMigration.Rmd' failed with diagnostics:
'.service_get_api_file' failed:
Too Many Requests (RFC 6585) (HTTP 429).
--- failed re-building ‘cgdsrMigration.Rmd’
SUMMARY: processing the following files failed:
‘cBioPortalData.Rmd’ ‘cBioPortalRClient.Rmd’ ‘cgdsrMigration.Rmd’
Error: Vignette re-building failed.
Execution halted