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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data epialleleR
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* checking for file ‘epialleleR/DESCRIPTION’ ... OK
* preparing ‘epialleleR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘epialleleR’ ...
** this is package ‘epialleleR’ version ‘1.19.3’
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
using C++17
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rhtslib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rhtslib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c rcpp_call_methylation.cpp -o rcpp_call_methylation.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rhtslib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c rcpp_check_bam.cpp -o rcpp_check_bam.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rhtslib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c rcpp_cx_report.cpp -o rcpp_cx_report.o
In file included from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/advanced_insert_int.hpp:28,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/vector.hpp:32,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/flat_tree.hpp:29,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/flat_map.hpp:29,
                 from rcpp_cx_report.cpp:3:
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/copy_move_algo.hpp: In instantiation of ‘F boost::container::dtl::memmove(I, I, F) [with I = std::pair<long unsigned int, std::array<int, 32> >*; F = std::pair<long unsigned int, std::array<int, 32> >*]’:
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/copy_move_algo.hpp:377:23:   required from ‘typename boost::container::dtl::enable_if_memtransfer_copy_constructible<I, F, F>::type boost::container::uninitialized_move_alloc(Allocator&, I, I, F) [with Allocator = new_allocator<std::pair<long unsigned int, std::array<int, 32> > >; I = std::pair<long unsigned int, std::array<int, 32> >*; F = std::pair<long unsigned int, std::array<int, 32> >*; typename dtl::enable_if_memtransfer_copy_constructible<I, F, F>::type = std::pair<long unsigned int, std::array<int, 32> >*]’
  377 | {  return dtl::memmove(f, l, r); }
      |           ~~~~~~~~~~~~^~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/copy_move_algo.hpp:1306:59:   required from ‘void boost::container::uninitialized_move_and_insert_alloc(Allocator&, F, F, F, O, std::size_t, InsertionProxy) [with Allocator = new_allocator<std::pair<long unsigned int, std::array<int, 32> > >; F = std::pair<long unsigned int, std::array<int, 32> >*; O = std::pair<long unsigned int, std::array<int, 32> >*; InsertionProxy = dtl::insert_range_proxy<new_allocator<std::pair<long unsigned int, std::array<int, 32> > >, boost::move_iterator<std::pair<long unsigned int, std::array<int, 32> >*> >; std::size_t = long unsigned int]’
 1306 |    O d_last = ::boost::container::uninitialized_move_alloc(a, first, pos, d_first);
      |               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/vector.hpp:3277:10:   required from ‘void boost::container::vector<T, Allocator, Options>::priv_insert_forward_range_new_allocation(T*, size_type, T*, size_type, InsertionProxy) [with InsertionProxy = boost::container::dtl::insert_range_proxy<boost::container::new_allocator<std::pair<long unsigned int, std::array<int, 32> > >, boost::move_iterator<std::pair<long unsigned int, std::array<int, 32> >*> >; T = std::pair<long unsigned int, std::array<int, 32> >; A = void; Options = void; size_type = long unsigned int]’
 3276 |       boost::container::uninitialized_move_and_insert_alloc
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 3277 |          (a, raw_old_buffer, pos, this->priv_raw_end(), new_start, n, insert_range_proxy);
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/vector.hpp:2837:10:   required from ‘void boost::container::vector<T, Allocator, Options>::priv_move_to_new_buffer(size_type, boost::container::version_1) [with T = std::pair<long unsigned int, std::array<int, 32> >; A = void; Options = void; size_type = long unsigned int; boost::container::version_1 = boost::move_detail::integral_constant<unsigned int, 1>]’
 2836 |       this->priv_insert_forward_range_new_allocation
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2837 |          ( boost::movelib::to_raw_pointer(p), new_cap, this->priv_raw_end(), 0, this->priv_dummy_empty_proxy());
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/vector.hpp:1657:39:   required from ‘void boost::container::vector<T, Allocator, Options>::reserve(size_type) [with T = std::pair<long unsigned int, std::array<int, 32> >; A = void; Options = void; size_type = long unsigned int]’
 1657 |          this->priv_move_to_new_buffer(new_cap, alloc_version());
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/flat_tree.hpp:410:16:   required from ‘void boost::container::dtl::flat_tree_reserve(SequenceContainer&, typename SequenceContainer::size_type, boost::move_detail::true_) [with SequenceContainer = boost::container::vector<std::pair<long unsigned int, std::array<int, 32> >, void, void>; typename SequenceContainer::size_type = long unsigned int; boost::move_detail::true_ = boost::move_detail::bool_<true>]’
  410 |    tseq.reserve(cap);
      |    ~~~~~~~~~~~~^~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/flat_tree.hpp:1462:26:   required from ‘void boost::container::dtl::flat_tree<Value, KeyOfValue, Compare, AllocatorOrContainer>::reserve(size_type) [with Value = std::pair<long unsigned int, std::array<int, 32> >; KeyOfValue = boost::container::dtl::select1st<long unsigned int>; Compare = std::less<long unsigned int>; AllocatorOrContainer = void; size_type = long unsigned int]’
 1462 |       (flat_tree_reserve)(this->m_data.m_seq, cnt, dtl::bool_<value>());
      |       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/flat_map.hpp:756:28:   required from ‘void boost::container::flat_map<Key, T, Compare, Allocator>::reserve(size_type) [with Key = long unsigned int; T = std::array<int, 32>; Compare = std::less<long unsigned int>; AllocatorOrContainer = void; size_type = long unsigned int]’
  756 |       { m_flat_tree.reserve(cnt);   }
      |         ~~~~~~~~~~~~~~~~~~~^~~~~
rcpp_cx_report.cpp:107:17:   required from here
  107 |   cx_map.reserve(100000);                                                       // reserving helps?
      |   ~~~~~~~~~~~~~~^~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/copy_move_algo.hpp:231:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘value_type’ {aka ‘struct std::pair<long unsigned int, std::array<int, 32> >’} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  231 |       std::memmove(dest_raw, beg_raw, sizeof(value_type)*n);
      |       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /opt/ohpc/pub/compiler/gcc/14.2.0/include/c++/14.2.0/bits/stl_algobase.h:64,
                 from /opt/ohpc/pub/compiler/gcc/14.2.0/include/c++/14.2.0/bits/specfun.h:43,
                 from /opt/ohpc/pub/compiler/gcc/14.2.0/include/c++/14.2.0/cmath:3898,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include/Rcpp/platform/compiler.h:100,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include/Rcpp/r/headers.h:66,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include/RcppCommon.h:30,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include/Rcpp.h:27,
                 from rcpp_cx_report.cpp:1:
/opt/ohpc/pub/compiler/gcc/14.2.0/include/c++/14.2.0/bits/stl_pair.h:284:12: note: ‘value_type’ {aka ‘struct std::pair<long unsigned int, std::array<int, 32> >’} declared here
  284 |     struct pair
      |            ^~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rhtslib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c rcpp_extract_patterns.cpp -o rcpp_extract_patterns.o
In file included from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/advanced_insert_int.hpp:28,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/vector.hpp:32,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/flat_tree.hpp:29,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/flat_map.hpp:29,
                 from rcpp_extract_patterns.cpp:5:
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/copy_move_algo.hpp: In instantiation of ‘F boost::container::dtl::memmove(I, I, F) [with I = std::pair<int, int>*; F = std::pair<int, int>*]’:
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/copy_move_algo.hpp:377:23:   required from ‘typename boost::container::dtl::enable_if_memtransfer_copy_constructible<I, F, F>::type boost::container::uninitialized_move_alloc(Allocator&, I, I, F) [with Allocator = new_allocator<std::pair<int, int> >; I = std::pair<int, int>*; F = std::pair<int, int>*; typename dtl::enable_if_memtransfer_copy_constructible<I, F, F>::type = std::pair<int, int>*]’
  377 | {  return dtl::memmove(f, l, r); }
      |           ~~~~~~~~~~~~^~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/copy_move_algo.hpp:1306:59:   required from ‘void boost::container::uninitialized_move_and_insert_alloc(Allocator&, F, F, F, O, std::size_t, InsertionProxy) [with Allocator = new_allocator<std::pair<int, int> >; F = std::pair<int, int>*; O = std::pair<int, int>*; InsertionProxy = dtl::insert_range_proxy<new_allocator<std::pair<int, int> >, boost::move_iterator<std::pair<int, int>*> >; std::size_t = long unsigned int]’
 1306 |    O d_last = ::boost::container::uninitialized_move_alloc(a, first, pos, d_first);
      |               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/vector.hpp:3277:10:   required from ‘void boost::container::vector<T, Allocator, Options>::priv_insert_forward_range_new_allocation(T*, size_type, T*, size_type, InsertionProxy) [with InsertionProxy = boost::container::dtl::insert_range_proxy<boost::container::new_allocator<std::pair<int, int> >, boost::move_iterator<std::pair<int, int>*> >; T = std::pair<int, int>; A = void; Options = void; size_type = long unsigned int]’
 3276 |       boost::container::uninitialized_move_and_insert_alloc
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 3277 |          (a, raw_old_buffer, pos, this->priv_raw_end(), new_start, n, insert_range_proxy);
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/vector.hpp:2837:10:   required from ‘void boost::container::vector<T, Allocator, Options>::priv_move_to_new_buffer(size_type, boost::container::version_1) [with T = std::pair<int, int>; A = void; Options = void; size_type = long unsigned int; boost::container::version_1 = boost::move_detail::integral_constant<unsigned int, 1>]’
 2836 |       this->priv_insert_forward_range_new_allocation
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2837 |          ( boost::movelib::to_raw_pointer(p), new_cap, this->priv_raw_end(), 0, this->priv_dummy_empty_proxy());
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/vector.hpp:1657:39:   required from ‘void boost::container::vector<T, Allocator, Options>::reserve(size_type) [with T = std::pair<int, int>; A = void; Options = void; size_type = long unsigned int]’
 1657 |          this->priv_move_to_new_buffer(new_cap, alloc_version());
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/flat_tree.hpp:410:16:   required from ‘void boost::container::dtl::flat_tree_reserve(SequenceContainer&, typename SequenceContainer::size_type, boost::move_detail::true_) [with SequenceContainer = boost::container::vector<std::pair<int, int>, void, void>; typename SequenceContainer::size_type = long unsigned int; boost::move_detail::true_ = boost::move_detail::bool_<true>]’
  410 |    tseq.reserve(cap);
      |    ~~~~~~~~~~~~^~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/flat_tree.hpp:1462:26:   required from ‘void boost::container::dtl::flat_tree<Value, KeyOfValue, Compare, AllocatorOrContainer>::reserve(size_type) [with Value = std::pair<int, int>; KeyOfValue = boost::container::dtl::select1st<int>; Compare = std::less<int>; AllocatorOrContainer = void; size_type = long unsigned int]’
 1462 |       (flat_tree_reserve)(this->m_data.m_seq, cnt, dtl::bool_<value>());
      |       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/flat_map.hpp:756:28:   required from ‘void boost::container::flat_map<Key, T, Compare, Allocator>::reserve(size_type) [with Key = int; T = int; Compare = std::less<int>; AllocatorOrContainer = void; size_type = long unsigned int]’
  756 |       { m_flat_tree.reserve(cnt);   }
      |         ~~~~~~~~~~~~~~~~~~~^~~~~
rcpp_extract_patterns.cpp:58:18:   required from here
   58 |   pos_map.reserve(std::max((int)(target_end-target_start), 0xFFFF));
      |   ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/copy_move_algo.hpp:231:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘value_type’ {aka ‘struct std::pair<int, int>’} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  231 |       std::memmove(dest_raw, beg_raw, sizeof(value_type)*n);
      |       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /opt/ohpc/pub/compiler/gcc/14.2.0/include/c++/14.2.0/bits/stl_algobase.h:64,
                 from /opt/ohpc/pub/compiler/gcc/14.2.0/include/c++/14.2.0/bits/specfun.h:43,
                 from /opt/ohpc/pub/compiler/gcc/14.2.0/include/c++/14.2.0/cmath:3898,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include/Rcpp/platform/compiler.h:100,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include/Rcpp/r/headers.h:66,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include/RcppCommon.h:30,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include/Rcpp.h:27,
                 from rcpp_extract_patterns.cpp:4:
/opt/ohpc/pub/compiler/gcc/14.2.0/include/c++/14.2.0/bits/stl_pair.h:284:12: note: ‘value_type’ {aka ‘struct std::pair<int, int>’} declared here
  284 |     struct pair
      |            ^~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rhtslib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c rcpp_fep.cpp -o rcpp_fep.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rhtslib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c rcpp_get_base_freqs.cpp -o rcpp_get_base_freqs.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rhtslib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c rcpp_get_xm_beta.cpp -o rcpp_get_xm_beta.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rhtslib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c rcpp_match_target.cpp -o rcpp_match_target.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rhtslib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c rcpp_mhl_report.cpp -o rcpp_mhl_report.o
In file included from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/advanced_insert_int.hpp:28,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/vector.hpp:32,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/flat_tree.hpp:29,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/flat_map.hpp:29,
                 from rcpp_mhl_report.cpp:3:
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/copy_move_algo.hpp: In instantiation of ‘F boost::container::dtl::memmove(I, I, F) [with I = std::pair<long unsigned int, std::array<long unsigned int, 32> >*; F = std::pair<long unsigned int, std::array<long unsigned int, 32> >*]’:
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/copy_move_algo.hpp:377:23:   required from ‘typename boost::container::dtl::enable_if_memtransfer_copy_constructible<I, F, F>::type boost::container::uninitialized_move_alloc(Allocator&, I, I, F) [with Allocator = new_allocator<std::pair<long unsigned int, std::array<long unsigned int, 32> > >; I = std::pair<long unsigned int, std::array<long unsigned int, 32> >*; F = std::pair<long unsigned int, std::array<long unsigned int, 32> >*; typename dtl::enable_if_memtransfer_copy_constructible<I, F, F>::type = std::pair<long unsigned int, std::array<long unsigned int, 32> >*]’
  377 | {  return dtl::memmove(f, l, r); }
      |           ~~~~~~~~~~~~^~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/copy_move_algo.hpp:1306:59:   required from ‘void boost::container::uninitialized_move_and_insert_alloc(Allocator&, F, F, F, O, std::size_t, InsertionProxy) [with Allocator = new_allocator<std::pair<long unsigned int, std::array<long unsigned int, 32> > >; F = std::pair<long unsigned int, std::array<long unsigned int, 32> >*; O = std::pair<long unsigned int, std::array<long unsigned int, 32> >*; InsertionProxy = dtl::insert_range_proxy<new_allocator<std::pair<long unsigned int, std::array<long unsigned int, 32> > >, boost::move_iterator<std::pair<long unsigned int, std::array<long unsigned int, 32> >*> >; std::size_t = long unsigned int]’
 1306 |    O d_last = ::boost::container::uninitialized_move_alloc(a, first, pos, d_first);
      |               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/vector.hpp:3277:10:   required from ‘void boost::container::vector<T, Allocator, Options>::priv_insert_forward_range_new_allocation(T*, size_type, T*, size_type, InsertionProxy) [with InsertionProxy = boost::container::dtl::insert_range_proxy<boost::container::new_allocator<std::pair<long unsigned int, std::array<long unsigned int, 32> > >, boost::move_iterator<std::pair<long unsigned int, std::array<long unsigned int, 32> >*> >; T = std::pair<long unsigned int, std::array<long unsigned int, 32> >; A = void; Options = void; size_type = long unsigned int]’
 3276 |       boost::container::uninitialized_move_and_insert_alloc
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 3277 |          (a, raw_old_buffer, pos, this->priv_raw_end(), new_start, n, insert_range_proxy);
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/vector.hpp:2837:10:   required from ‘void boost::container::vector<T, Allocator, Options>::priv_move_to_new_buffer(size_type, boost::container::version_1) [with T = std::pair<long unsigned int, std::array<long unsigned int, 32> >; A = void; Options = void; size_type = long unsigned int; boost::container::version_1 = boost::move_detail::integral_constant<unsigned int, 1>]’
 2836 |       this->priv_insert_forward_range_new_allocation
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2837 |          ( boost::movelib::to_raw_pointer(p), new_cap, this->priv_raw_end(), 0, this->priv_dummy_empty_proxy());
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/vector.hpp:1657:39:   required from ‘void boost::container::vector<T, Allocator, Options>::reserve(size_type) [with T = std::pair<long unsigned int, std::array<long unsigned int, 32> >; A = void; Options = void; size_type = long unsigned int]’
 1657 |          this->priv_move_to_new_buffer(new_cap, alloc_version());
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/flat_tree.hpp:410:16:   required from ‘void boost::container::dtl::flat_tree_reserve(SequenceContainer&, typename SequenceContainer::size_type, boost::move_detail::true_) [with SequenceContainer = boost::container::vector<std::pair<long unsigned int, std::array<long unsigned int, 32> >, void, void>; typename SequenceContainer::size_type = long unsigned int; boost::move_detail::true_ = boost::move_detail::bool_<true>]’
  410 |    tseq.reserve(cap);
      |    ~~~~~~~~~~~~^~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/flat_tree.hpp:1462:26:   required from ‘void boost::container::dtl::flat_tree<Value, KeyOfValue, Compare, AllocatorOrContainer>::reserve(size_type) [with Value = std::pair<long unsigned int, std::array<long unsigned int, 32> >; KeyOfValue = boost::container::dtl::select1st<long unsigned int>; Compare = std::less<long unsigned int>; AllocatorOrContainer = void; size_type = long unsigned int]’
 1462 |       (flat_tree_reserve)(this->m_data.m_seq, cnt, dtl::bool_<value>());
      |       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/flat_map.hpp:756:28:   required from ‘void boost::container::flat_map<Key, T, Compare, Allocator>::reserve(size_type) [with Key = long unsigned int; T = std::array<long unsigned int, 32>; Compare = std::less<long unsigned int>; AllocatorOrContainer = void; size_type = long unsigned int]’
  756 |       { m_flat_tree.reserve(cnt);   }
      |         ~~~~~~~~~~~~~~~~~~~^~~~~
rcpp_mhl_report.cpp:137:18:   required from here
  137 |   mhl_map.reserve(100000);                                                      // reserving helps?
      |   ~~~~~~~~~~~~~~~^~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/container/detail/copy_move_algo.hpp:231:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘value_type’ {aka ‘struct std::pair<long unsigned int, std::array<long unsigned int, 32> >’} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  231 |       std::memmove(dest_raw, beg_raw, sizeof(value_type)*n);
      |       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /opt/ohpc/pub/compiler/gcc/14.2.0/include/c++/14.2.0/bits/stl_algobase.h:64,
                 from /opt/ohpc/pub/compiler/gcc/14.2.0/include/c++/14.2.0/bits/specfun.h:43,
                 from /opt/ohpc/pub/compiler/gcc/14.2.0/include/c++/14.2.0/cmath:3898,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include/Rcpp/platform/compiler.h:100,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include/Rcpp/r/headers.h:66,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include/RcppCommon.h:30,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include/Rcpp.h:27,
                 from rcpp_mhl_report.cpp:1:
/opt/ohpc/pub/compiler/gcc/14.2.0/include/c++/14.2.0/bits/stl_pair.h:284:12: note: ‘value_type’ {aka ‘struct std::pair<long unsigned int, std::array<long unsigned int, 32> >’} declared here
  284 |     struct pair
      |            ^~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rhtslib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c rcpp_read_bam.cpp -o rcpp_read_bam.o
In file included from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/mpl/arg.hpp:25,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/mpl/placeholders.hpp:24,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/iterator/advance.hpp:12,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/next_prior.hpp:24,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/interval_base_set.hpp:23,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/interval_set.hpp:14,
                 from rcpp_read_bam.cpp:3:
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
  195 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  196 |     );
      |     ~                
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses
  194 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
      |                     -
  195 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  196 |     );
      |     ~                
      |     -
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  200 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  201 |     );
      |     ~                
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                     -
  200 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  201 |     );
      |     ~                
      |     -
rcpp_read_bam.cpp: In function ‘T_granges load_intervals(Rcpp::DataFrame&, const bam_hdr_t*)’:
rcpp_read_bam.cpp:61:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |   for (int i=0; i<seqlevels.size(); i++) {                                      // for every BED seqlevel
      |                 ~^~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/assert.hpp:35,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/continuous_interval.hpp:13,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/type_traits/interval_type_default.hpp:13,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/interval.hpp:12,
                 from rcpp_read_bam.cpp:2:
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::DefaultConstructible<int> >]’:
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept_check.hpp:137:5:   required from ‘struct boost::DefaultConstructible<int>’
   92 |     &::boost::concepts::requirement_<ModelFnPtr>::failed>    \
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept_check.hpp:135:3:   required from ‘struct boost::DefaultConstructibleConcept<int>’
  135 |   BOOST_concept(DefaultConstructible,(TT))
      |                 ^~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::DefaultConstructibleConcept<int>]’
   32 |   inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
      |                                                              ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   required from ‘const bool boost::concepts::not_satisfied<boost::DefaultConstructibleConcept<int> >::value’
   44 |       , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
      |                       ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51:   required from ‘struct boost::concepts::not_satisfied<boost::DefaultConstructibleConcept<int> >’
   45 |     typedef boost::integral_constant<bool, value> type;
      |                                                   ^~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/general.hpp:72:8:   required from ‘struct boost::concepts::requirement_<void (*)(boost::DefaultConstructibleConcept<int>)>’
   72 | struct requirement_<void(*)(Model)>
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/continuous_interval.hpp:45:9:   required from ‘boost::icl::discrete_interval<DomainT, Compare>::discrete_interval(const DomainT&, const DomainT&, boost::icl::interval_bounds, boost::icl::discrete_interval<DomainT, Compare>*) [with DomainT = int; Compare = std::less]’
   92 |     &::boost::concepts::requirement_<ModelFnPtr>::failed>    \
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/discrete_interval.hpp:120:16:   required from ‘static boost::icl::dynamic_interval_traits<boost::icl::discrete_interval<DomainT, Compare> >::interval_type boost::icl::dynamic_interval_traits<boost::icl::discrete_interval<DomainT, Compare> >::construct(const domain_type&, const domain_type&, boost::icl::interval_bounds) [with DomainT = int; Compare = std::less; interval_type = boost::icl::discrete_interval<int, std::less>; domain_type = int]’
  120 |         return interval_type(lo, up, bounds, static_cast<interval_type*>(0) );
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/concept/interval.hpp:254:52:   required from ‘typename boost::enable_if<boost::icl::has_dynamic_bounds<Type>, Type>::type boost::icl::construct(const typename interval_traits<Type>::domain_type&, const typename interval_traits<Type>::domain_type&, interval_bounds) [with Type = discrete_interval<int, std::less>; typename boost::enable_if<has_dynamic_bounds<Type>, Type>::type = discrete_interval<int, std::less>; typename interval_traits<Type>::domain_type = int]’
  254 |     return dynamic_interval_traits<Type>::construct(low, up, bounds);
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/interval.hpp:91:47:   required from ‘static boost::icl::interval<DomainT, Compare>::interval_type boost::icl::interval<DomainT, Compare>::closed(const DomainT&, const DomainT&) [with DomainT = int; Compare = std::less; interval_type = boost::icl::discrete_interval<int, std::less>]’
   91 |         { return icl::construct<interval_type>(low, up, interval_bounds::closed()); }
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rcpp_read_bam.cpp:73:58:   required from here
   73 |       targets[bed2bam[seqnames[i]-1]] += T_irange::closed(start[i]-1, end[i]-1);// add interval, 0-based
      |                                          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
   50 |     static void failed() { ((Model*)0)->~Model(); }
      |                            ~~~~~~~~~~~~~~~~~~~^~
In file included from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept_check.hpp:31,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/detail/concept_check.hpp:11,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/continuous_interval.hpp:14:
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::DefaultConstructible<int>]’
   20 |     ~usage_requirements() { ((Model*)0)->~Model(); }
      |     ^
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::DefaultConstructibleConcept<int>]’:
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/continuous_interval.hpp:45:9:   required from ‘boost::icl::discrete_interval<DomainT, Compare>::discrete_interval(const DomainT&, const DomainT&, boost::icl::interval_bounds, boost::icl::discrete_interval<DomainT, Compare>*) [with DomainT = int; Compare = std::less]’
   92 |     &::boost::concepts::requirement_<ModelFnPtr>::failed>    \
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/discrete_interval.hpp:120:16:   required from ‘static boost::icl::dynamic_interval_traits<boost::icl::discrete_interval<DomainT, Compare> >::interval_type boost::icl::dynamic_interval_traits<boost::icl::discrete_interval<DomainT, Compare> >::construct(const domain_type&, const domain_type&, boost::icl::interval_bounds) [with DomainT = int; Compare = std::less; interval_type = boost::icl::discrete_interval<int, std::less>; domain_type = int]’
  120 |         return interval_type(lo, up, bounds, static_cast<interval_type*>(0) );
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/concept/interval.hpp:254:52:   required from ‘typename boost::enable_if<boost::icl::has_dynamic_bounds<Type>, Type>::type boost::icl::construct(const typename interval_traits<Type>::domain_type&, const typename interval_traits<Type>::domain_type&, interval_bounds) [with Type = discrete_interval<int, std::less>; typename boost::enable_if<has_dynamic_bounds<Type>, Type>::type = discrete_interval<int, std::less>; typename interval_traits<Type>::domain_type = int]’
  254 |     return dynamic_interval_traits<Type>::construct(low, up, bounds);
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/interval.hpp:91:47:   required from ‘static boost::icl::interval<DomainT, Compare>::interval_type boost::icl::interval<DomainT, Compare>::closed(const DomainT&, const DomainT&) [with DomainT = int; Compare = std::less; interval_type = boost::icl::discrete_interval<int, std::less>]’
   91 |         { return icl::construct<interval_type>(low, up, interval_bounds::closed()); }
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rcpp_read_bam.cpp:73:58:   required from here
   73 |       targets[bed2bam[seqnames[i]-1]] += T_irange::closed(start[i]-1, end[i]-1);// add interval, 0-based
      |                                          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
   50 |     static void failed() { ((Model*)0)->~Model(); }
      |                            ~~~~~~~~~~~~~~~~~~~^~
In file included from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/mpl/aux_/integral_wrapper.hpp:22,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/mpl/int.hpp:20,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/mpl/lambda_fwd.hpp:23,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/mpl/aux_/na_spec.hpp:18,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/mpl/if.hpp:19,
                 from /home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/type_traits/interval_type_default.hpp:11:
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept_check.hpp:135:17: note: in a call to non-static member function ‘boost::DefaultConstructibleConcept<int>::~DefaultConstructibleConcept()’
  135 |   BOOST_concept(DefaultConstructible,(TT))
      |                 ^~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/preprocessor/cat.hpp:29:34: note: in definition of macro ‘BOOST_PP_CAT_I’
   29 | #    define BOOST_PP_CAT_I(a, b) a ## b
      |                                  ^
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/concept_def.hpp:23:12: note: in expansion of macro ‘BOOST_PP_CAT’
   23 |     struct BOOST_PP_CAT(name,Concept)                                           \
      |            ^~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept_check.hpp:135:3: note: in expansion of macro ‘BOOST_concept’
  135 |   BOOST_concept(DefaultConstructible,(TT))
      |   ^~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::LessThanComparable<int> >]’:
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept_check.hpp:243:5:   required from ‘struct boost::LessThanComparable<int>’
   92 |     &::boost::concepts::requirement_<ModelFnPtr>::failed>    \
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept_check.hpp:241:3:   required from ‘struct boost::LessThanComparableConcept<int>’
  241 |   BOOST_concept(LessThanComparable,(TT))
      |                 ^~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::LessThanComparableConcept<int>]’
   32 |   inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
      |                                                              ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   required from ‘const bool boost::concepts::not_satisfied<boost::LessThanComparableConcept<int> >::value’
   44 |       , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
      |                       ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/has_constraints.hpp:45:51:   required from ‘struct boost::concepts::not_satisfied<boost::LessThanComparableConcept<int> >’
   45 |     typedef boost::integral_constant<bool, value> type;
      |                                                   ^~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/general.hpp:72:8:   required from ‘struct boost::concepts::requirement_<void (*)(boost::LessThanComparableConcept<int>)>’
   72 | struct requirement_<void(*)(Model)>
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/continuous_interval.hpp:46:9:   required from ‘boost::icl::discrete_interval<DomainT, Compare>::discrete_interval(const DomainT&, const DomainT&, boost::icl::interval_bounds, boost::icl::discrete_interval<DomainT, Compare>*) [with DomainT = int; Compare = std::less]’
   92 |     &::boost::concepts::requirement_<ModelFnPtr>::failed>    \
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/discrete_interval.hpp:120:16:   required from ‘static boost::icl::dynamic_interval_traits<boost::icl::discrete_interval<DomainT, Compare> >::interval_type boost::icl::dynamic_interval_traits<boost::icl::discrete_interval<DomainT, Compare> >::construct(const domain_type&, const domain_type&, boost::icl::interval_bounds) [with DomainT = int; Compare = std::less; interval_type = boost::icl::discrete_interval<int, std::less>; domain_type = int]’
  120 |         return interval_type(lo, up, bounds, static_cast<interval_type*>(0) );
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/concept/interval.hpp:254:52:   required from ‘typename boost::enable_if<boost::icl::has_dynamic_bounds<Type>, Type>::type boost::icl::construct(const typename interval_traits<Type>::domain_type&, const typename interval_traits<Type>::domain_type&, interval_bounds) [with Type = discrete_interval<int, std::less>; typename boost::enable_if<has_dynamic_bounds<Type>, Type>::type = discrete_interval<int, std::less>; typename interval_traits<Type>::domain_type = int]’
  254 |     return dynamic_interval_traits<Type>::construct(low, up, bounds);
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/interval.hpp:91:47:   required from ‘static boost::icl::interval<DomainT, Compare>::interval_type boost::icl::interval<DomainT, Compare>::closed(const DomainT&, const DomainT&) [with DomainT = int; Compare = std::less; interval_type = boost::icl::discrete_interval<int, std::less>]’
   91 |         { return icl::construct<interval_type>(low, up, interval_bounds::closed()); }
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rcpp_read_bam.cpp:73:58:   required from here
   73 |       targets[bed2bam[seqnames[i]-1]] += T_irange::closed(start[i]-1, end[i]-1);// add interval, 0-based
      |                                          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
   50 |     static void failed() { ((Model*)0)->~Model(); }
      |                            ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::LessThanComparable<int>]’
   20 |     ~usage_requirements() { ((Model*)0)->~Model(); }
      |     ^
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::LessThanComparableConcept<int>]’:
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/continuous_interval.hpp:46:9:   required from ‘boost::icl::discrete_interval<DomainT, Compare>::discrete_interval(const DomainT&, const DomainT&, boost::icl::interval_bounds, boost::icl::discrete_interval<DomainT, Compare>*) [with DomainT = int; Compare = std::less]’
   92 |     &::boost::concepts::requirement_<ModelFnPtr>::failed>    \
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/discrete_interval.hpp:120:16:   required from ‘static boost::icl::dynamic_interval_traits<boost::icl::discrete_interval<DomainT, Compare> >::interval_type boost::icl::dynamic_interval_traits<boost::icl::discrete_interval<DomainT, Compare> >::construct(const domain_type&, const domain_type&, boost::icl::interval_bounds) [with DomainT = int; Compare = std::less; interval_type = boost::icl::discrete_interval<int, std::less>; domain_type = int]’
  120 |         return interval_type(lo, up, bounds, static_cast<interval_type*>(0) );
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/concept/interval.hpp:254:52:   required from ‘typename boost::enable_if<boost::icl::has_dynamic_bounds<Type>, Type>::type boost::icl::construct(const typename interval_traits<Type>::domain_type&, const typename interval_traits<Type>::domain_type&, interval_bounds) [with Type = discrete_interval<int, std::less>; typename boost::enable_if<has_dynamic_bounds<Type>, Type>::type = discrete_interval<int, std::less>; typename interval_traits<Type>::domain_type = int]’
  254 |     return dynamic_interval_traits<Type>::construct(low, up, bounds);
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/interval.hpp:91:47:   required from ‘static boost::icl::interval<DomainT, Compare>::interval_type boost::icl::interval<DomainT, Compare>::closed(const DomainT&, const DomainT&) [with DomainT = int; Compare = std::less; interval_type = boost::icl::discrete_interval<int, std::less>]’
   91 |         { return icl::construct<interval_type>(low, up, interval_bounds::closed()); }
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rcpp_read_bam.cpp:73:58:   required from here
   73 |       targets[bed2bam[seqnames[i]-1]] += T_irange::closed(start[i]-1, end[i]-1);// add interval, 0-based
      |                                          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
   50 |     static void failed() { ((Model*)0)->~Model(); }
      |                            ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept_check.hpp:241:17: note: in a call to non-static member function ‘boost::LessThanComparableConcept<int>::~LessThanComparableConcept()’
  241 |   BOOST_concept(LessThanComparable,(TT))
      |                 ^~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/preprocessor/cat.hpp:29:34: note: in definition of macro ‘BOOST_PP_CAT_I’
   29 | #    define BOOST_PP_CAT_I(a, b) a ## b
      |                                  ^
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/concept_def.hpp:23:12: note: in expansion of macro ‘BOOST_PP_CAT’
   23 |     struct BOOST_PP_CAT(name,Concept)                                           \
      |            ^~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept_check.hpp:241:3: note: in expansion of macro ‘BOOST_concept’
  241 |   BOOST_concept(LessThanComparable,(TT))
      |   ^~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::DefaultConstructible<int>]’:
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/general.hpp:50:47:   required from ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::DefaultConstructible<int> >]’
   50 |     static void failed() { ((Model*)0)->~Model(); }
      |                            ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept_check.hpp:137:5:   required from ‘struct boost::DefaultConstructible<int>’
   92 |     &::boost::concepts::requirement_<ModelFnPtr>::failed>    \
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept_check.hpp:135:3:   required from ‘struct boost::DefaultConstructibleConcept<int>’
  135 |   BOOST_concept(DefaultConstructible,(TT))
      |                 ^~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::DefaultConstructibleConcept<int>]’
   32 |   inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
      |                                                              ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/general.hpp:72:8:   required from ‘struct boost::concepts::requirement_<void (*)(boost::DefaultConstructibleConcept<int>)>’
   72 | struct requirement_<void(*)(Model)>
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/continuous_interval.hpp:45:9:   required from ‘boost::icl::discrete_interval<DomainT, Compare>::discrete_interval(const DomainT&, const DomainT&, boost::icl::interval_bounds, boost::icl::discrete_interval<DomainT, Compare>*) [with DomainT = int; Compare = std::less]’
   92 |     &::boost::concepts::requirement_<ModelFnPtr>::failed>    \
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/discrete_interval.hpp:120:16:   required from ‘static boost::icl::dynamic_interval_traits<boost::icl::discrete_interval<DomainT, Compare> >::interval_type boost::icl::dynamic_interval_traits<boost::icl::discrete_interval<DomainT, Compare> >::construct(const domain_type&, const domain_type&, boost::icl::interval_bounds) [with DomainT = int; Compare = std::less; interval_type = boost::icl::discrete_interval<int, std::less>; domain_type = int]’
  120 |         return interval_type(lo, up, bounds, static_cast<interval_type*>(0) );
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/concept/interval.hpp:254:52:   required from ‘typename boost::enable_if<boost::icl::has_dynamic_bounds<Type>, Type>::type boost::icl::construct(const typename interval_traits<Type>::domain_type&, const typename interval_traits<Type>::domain_type&, interval_bounds) [with Type = discrete_interval<int, std::less>; typename boost::enable_if<has_dynamic_bounds<Type>, Type>::type = discrete_interval<int, std::less>; typename interval_traits<Type>::domain_type = int]’
  254 |     return dynamic_interval_traits<Type>::construct(low, up, bounds);
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/interval.hpp:91:47:   required from ‘static boost::icl::interval<DomainT, Compare>::interval_type boost::icl::interval<DomainT, Compare>::closed(const DomainT&, const DomainT&) [with DomainT = int; Compare = std::less; interval_type = boost::icl::discrete_interval<int, std::less>]’
   91 |         { return icl::construct<interval_type>(low, up, interval_bounds::closed()); }
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rcpp_read_bam.cpp:73:58:   required from here
   73 |       targets[bed2bam[seqnames[i]-1]] += T_irange::closed(start[i]-1, end[i]-1);// add interval, 0-based
      |                                          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull]
   20 |     ~usage_requirements() { ((Model*)0)->~Model(); }
      |                             ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::DefaultConstructible<TT>::~DefaultConstructible() [with TT = int]’
   37 |       ~model()
      |       ^
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept_check.hpp:137:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’
  137 |     BOOST_CONCEPT_USAGE(DefaultConstructible) {
      |     ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/usage.hpp: In instantiation of ‘boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::LessThanComparable<int>]’:
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/general.hpp:50:47:   required from ‘static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::LessThanComparable<int> >]’
   50 |     static void failed() { ((Model*)0)->~Model(); }
      |                            ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept_check.hpp:243:5:   required from ‘struct boost::LessThanComparable<int>’
   92 |     &::boost::concepts::requirement_<ModelFnPtr>::failed>    \
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept_check.hpp:241:3:   required from ‘struct boost::LessThanComparableConcept<int>’
  241 |   BOOST_concept(LessThanComparable,(TT))
      |                 ^~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/has_constraints.hpp:32:62:   required by substitution of ‘template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::LessThanComparableConcept<int>]’
   32 |   inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
      |                                                              ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/has_constraints.hpp:42:5:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/detail/general.hpp:72:8:   required from ‘struct boost::concepts::requirement_<void (*)(boost::LessThanComparableConcept<int>)>’
   72 | struct requirement_<void(*)(Model)>
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/continuous_interval.hpp:46:9:   required from ‘boost::icl::discrete_interval<DomainT, Compare>::discrete_interval(const DomainT&, const DomainT&, boost::icl::interval_bounds, boost::icl::discrete_interval<DomainT, Compare>*) [with DomainT = int; Compare = std::less]’
   92 |     &::boost::concepts::requirement_<ModelFnPtr>::failed>    \
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/discrete_interval.hpp:120:16:   required from ‘static boost::icl::dynamic_interval_traits<boost::icl::discrete_interval<DomainT, Compare> >::interval_type boost::icl::dynamic_interval_traits<boost::icl::discrete_interval<DomainT, Compare> >::construct(const domain_type&, const domain_type&, boost::icl::interval_bounds) [with DomainT = int; Compare = std::less; interval_type = boost::icl::discrete_interval<int, std::less>; domain_type = int]’
  120 |         return interval_type(lo, up, bounds, static_cast<interval_type*>(0) );
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/concept/interval.hpp:254:52:   required from ‘typename boost::enable_if<boost::icl::has_dynamic_bounds<Type>, Type>::type boost::icl::construct(const typename interval_traits<Type>::domain_type&, const typename interval_traits<Type>::domain_type&, interval_bounds) [with Type = discrete_interval<int, std::less>; typename boost::enable_if<has_dynamic_bounds<Type>, Type>::type = discrete_interval<int, std::less>; typename interval_traits<Type>::domain_type = int]’
  254 |     return dynamic_interval_traits<Type>::construct(low, up, bounds);
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/icl/interval.hpp:91:47:   required from ‘static boost::icl::interval<DomainT, Compare>::interval_type boost::icl::interval<DomainT, Compare>::closed(const DomainT&, const DomainT&) [with DomainT = int; Compare = std::less; interval_type = boost::icl::discrete_interval<int, std::less>]’
   91 |         { return icl::construct<interval_type>(low, up, interval_bounds::closed()); }
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rcpp_read_bam.cpp:73:58:   required from here
   73 |       targets[bed2bam[seqnames[i]-1]] += T_irange::closed(start[i]-1, end[i]-1);// add interval, 0-based
      |                                          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/usage.hpp:20:48: warning: ‘this’ pointer is null [-Wnonnull]
   20 |     ~usage_requirements() { ((Model*)0)->~Model(); }
      |                             ~~~~~~~~~~~~~~~~~~~^~
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::LessThanComparable<TT>::~LessThanComparable() [with TT = int]’
   37 |       ~model()
      |       ^
/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include/boost/concept_check.hpp:243:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’
  243 |     BOOST_CONCEPT_USAGE(LessThanComparable) {
      |     ^~~~~~~~~~~~~~~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rhtslib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c rcpp_read_genome.cpp -o rcpp_read_genome.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rhtslib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c rcpp_simulate_bam.cpp -o rcpp_simulate_bam.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/BH/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rhtslib/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c rcpp_threshold_reads.cpp -o rcpp_threshold_reads.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o epialleleR.so RcppExports.o rcpp_call_methylation.o rcpp_check_bam.o rcpp_cx_report.o rcpp_extract_patterns.o rcpp_fep.o rcpp_get_base_freqs.o rcpp_get_xm_beta.o rcpp_match_target.o rcpp_mhl_report.o rcpp_read_bam.o rcpp_read_genome.o rcpp_simulate_bam.o rcpp_threshold_reads.o /home/biocbuild/R/R-devel_2025-02-19/site-library/Rhtslib/usrlib/libhts.a -lcurl -lbz2 -llzma -lz -L/home/biocbuild/R/R/lib -lR
/usr/bin/ld: cannot find -lcurl: No such file or directory
collect2: error: ld returned 1 exit status
make: *** [/home/biocbuild/R/R/share/make/shlib.mk:10: epialleleR.so] Error 1
ERROR: compilation failed for package ‘epialleleR’
* removing ‘/home/biocbuild/tmp/RtmpyvKLcd/Rinst8be3a6fb52764/epialleleR’
      -----------------------------------
ERROR: package installation failed