Back to Multiple platform build/check report for BioC 3.23:   simplified   long
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2026-04-11 11:37 -0400 (Sat, 11 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 alpha (2026-04-05 r89794) 4919
kjohnson3macOS 13.7.7 Venturaarm644.6.0 alpha (2026-04-08 r89818) 4631
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1275/2390HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metaseqR2 1.23.2  (landing page)
Panagiotis Moulos
Snapshot Date: 2026-04-10 13:40 -0400 (Fri, 10 Apr 2026)
git_url: https://git.bioconductor.org/packages/metaseqR2
git_branch: devel
git_last_commit: 055a116
git_last_commit_date: 2026-03-21 08:23:54 -0400 (Sat, 21 Mar 2026)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for metaseqR2 in R Universe.

BUILD BIN results for metaseqR2 on kjohnson3

To the developers/maintainers of the metaseqR2 package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metaseqR2.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: metaseqR2
Version: 1.23.2
Command: rm -rf metaseqR2.buildbin-libdir && mkdir metaseqR2.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh metaseqR2_1.23.2.tar.gz /Library/Frameworks/R.framework/Resources/bin/R metaseqR2.buildbin-libdir
StartedAt: 2026-04-10 23:42:01 -0400 (Fri, 10 Apr 2026)
EndedAt: 2026-04-10 23:42:35 -0400 (Fri, 10 Apr 2026)
EllapsedTime: 34.5 seconds
RetCode: 0
Status:   OK  
PackageFile: metaseqR2_1.23.2.tgz
PackageFileSize: 4.693 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf metaseqR2.buildbin-libdir && mkdir metaseqR2.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh metaseqR2_1.23.2.tar.gz /Library/Frameworks/R.framework/Resources/bin/R metaseqR2.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=metaseqR2.buildbin-libdir metaseqR2_1.23.2.tar.gz'
>>>>>>> 

* installing *source* package ‘metaseqR2’ ...
** this is package ‘metaseqR2’ version ‘1.23.2’
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c pval.c -o pval.o
pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable]
   26 |    double esttotalperlength = total/2;
      |           ^~~~~~~~~~~~~~~~~
pval.c:29:13: warning: variable 'steps' set but not used [-Wunused-but-set-variable]
   29 |    long int steps = 0;
      |             ^
2 warnings generated.
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o metaseqR2.so pval.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Users/biocbuild/bbs-3.23-bioc/meat/metaseqR2.buildbin-libdir/00LOCK-metaseqR2/00new/metaseqR2/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (metaseqR2)


>>>>>>> 
>>>>>>> FIXING PATHS TO DYNAMIC LIBRARIES FOR metaseqR2.buildbin-libdir/metaseqR2/libs/metaseqR2.so
>>>>>>> 

>>>>>>> Paths before fix:
metaseqR2.buildbin-libdir/metaseqR2/libs/metaseqR2.so:
	metaseqR2.so (compatibility version 0.0.0, current version 0.0.0)
	/Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libR.dylib (compatibility version 4.6.0, current version 4.6.0)
	/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1356.0.0)

>>>>>>> Fix with install_name_tool:
install_name_tool -change "/usr/local/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libgcc_s.1.1.dylib" "metaseqR2.buildbin-libdir/metaseqR2/libs/metaseqR2.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libgfortran.5.dylib" "metaseqR2.buildbin-libdir/metaseqR2/libs/metaseqR2.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libquadmath.0.dylib" "metaseqR2.buildbin-libdir/metaseqR2/libs/metaseqR2.so"

>>>>>>> Paths after fix:
metaseqR2.buildbin-libdir/metaseqR2/libs/metaseqR2.so:
	metaseqR2.so (compatibility version 0.0.0, current version 0.0.0)
	/Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libR.dylib (compatibility version 4.6.0, current version 4.6.0)
	/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1356.0.0)