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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL motifmatchr
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
Warning: SystemRequirements specified C++11: support has been removed
* installing *source* package ‘motifmatchr’ ...
** this is package ‘motifmatchr’ version ‘1.33.0’
** using staged installation
** libs
specified C++11
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./MOODS/ -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./MOODS/ -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c r_interface.cpp -o r_interface.o
In file included from r_interface.cpp:2:
In file included from /Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include/RcppCommon.h:30:
In file included from /Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include/Rcpp/r/headers.h:67:
In file included from /Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include/Rcpp/platform/compiler.h:39:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/unordered_map:595:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__hash_table:29:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__memory/unique_ptr.h:78:5: warning: delete called on 'MOODS::scan::Motif' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor]
   78 |     delete __ptr;
      |     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__memory/unique_ptr.h:300:7: note: in instantiation of member function 'std::default_delete<MOODS::scan::Motif>::operator()' requested here
  300 |       __deleter_(__tmp);
      |       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__memory/unique_ptr.h:269:71: note: in instantiation of member function 'std::unique_ptr<MOODS::scan::Motif>::reset' requested here
  269 |   _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 ~unique_ptr() { reset(); }
      |                                                                       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__memory/construct_at.h:66:11: note: in instantiation of member function 'std::unique_ptr<MOODS::scan::Motif>::~unique_ptr' requested here
   66 |   __loc->~_Tp();
      |           ^
1 warning generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./MOODS/ -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c MOODS/scanner.cpp -o MOODS/scanner.o
In file included from MOODS/scanner.cpp:12:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/memory:947:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__memory/inout_ptr.h:16:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__memory/shared_ptr.h:35:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__memory/unique_ptr.h:78:5: warning: delete called on 'MOODS::scan::Motif' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor]
   78 |     delete __ptr;
      |     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__memory/unique_ptr.h:300:7: note: in instantiation of member function 'std::default_delete<MOODS::scan::Motif>::operator()' requested here
  300 |       __deleter_(__tmp);
      |       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__memory/unique_ptr.h:269:71: note: in instantiation of member function 'std::unique_ptr<MOODS::scan::Motif>::reset' requested here
  269 |   _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 ~unique_ptr() { reset(); }
      |                                                                       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__memory/construct_at.h:66:11: note: in instantiation of member function 'std::unique_ptr<MOODS::scan::Motif>::~unique_ptr' requested here
   66 |   __loc->~_Tp();
      |           ^
1 warning generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./MOODS/ -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c MOODS/motif_h.cpp -o MOODS/motif_h.o
MOODS/motif_h.cpp:256:25: warning: '&' within '^' [-Wbitwise-op-parentheses]
  256 |             CODE = MASK & (CODE << SHIFT) ^ alphabet_map[s[ii + i + q - 1]];
      |                    ~~~~~^~~~~~~~~~~~~~~~~ ~
MOODS/motif_h.cpp:256:25: note: place parentheses around the '&' expression to silence this warning
  256 |             CODE = MASK & (CODE << SHIFT) ^ alphabet_map[s[ii + i + q - 1]];
      |                         ^
      |                    (                     )
1 warning generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./MOODS/ -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c MOODS/motif_0.cpp -o MOODS/motif_0.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./MOODS/ -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c MOODS/moods_tools.cpp -o MOODS/moods_tools.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./MOODS/ -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c MOODS/moods_scan.cpp -o MOODS/moods_scan.o
MOODS/moods_scan.cpp:97:14: warning: unused variable 'done' [-Wunused-variable]
   97 |         bool done = 0;
      |              ^~~~
MOODS/moods_scan.cpp:252:33: warning: '&' within '|' [-Wbitwise-op-parentheses]
  252 |                     CODE = MASK & (CODE << SHIFT) | alphabet_map[seq[i+j+q-1]];
      |                            ~~~~~^~~~~~~~~~~~~~~~~ ~
MOODS/moods_scan.cpp:252:33: note: place parentheses around the '&' expression to silence this warning
  252 |                     CODE = MASK & (CODE << SHIFT) | alphabet_map[seq[i+j+q-1]];
      |                                 ^
      |                            (                     )
In file included from MOODS/moods_scan.cpp:3:
In file included from MOODS/moods.h:5:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/vector:352:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/algorithm:1854:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__algorithm/for_each.h:16:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__ranges/movable_box.h:21:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/optional:1302:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/memory:947:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__memory/inout_ptr.h:16:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__memory/shared_ptr.h:35:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__memory/unique_ptr.h:78:5: warning: delete called on 'MOODS::scan::Motif' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor]
   78 |     delete __ptr;
      |     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__memory/unique_ptr.h:300:7: note: in instantiation of member function 'std::default_delete<MOODS::scan::Motif>::operator()' requested here
  300 |       __deleter_(__tmp);
      |       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__memory/unique_ptr.h:269:71: note: in instantiation of member function 'std::unique_ptr<MOODS::scan::Motif>::reset' requested here
  269 |   _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX23 ~unique_ptr() { reset(); }
      |                                                                       ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__memory/construct_at.h:66:11: note: in instantiation of member function 'std::unique_ptr<MOODS::scan::Motif>::~unique_ptr' requested here
   66 |   __loc->~_Tp();
      |           ^
3 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./MOODS/ -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c MOODS/moods_parsers.cpp -o MOODS/moods_parsers.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./MOODS/ -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c MOODS/moods_misc.cpp -o MOODS/moods_misc.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./MOODS/ -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c MOODS/match_types.cpp -o MOODS/match_types.o
clang++ -arch arm64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o motifmatchr.so ./RcppExports.o ./r_interface.o ./MOODS/scanner.o ./MOODS/motif_h.o ./MOODS/motif_0.o ./MOODS/moods_tools.o ./MOODS/moods_scan.o ./MOODS/moods_parsers.o ./MOODS/moods_misc.o ./MOODS/match_types.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.6/Resources/library/00LOCK-motifmatchr/00new/motifmatchr/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (motifmatchr)