Multiple platform build/check report for BioC 3.23 - BUILD results for multiMiR on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 alpha (2026-04-05 r89794)	4919
kjohnson3	macOS 13.7.7 Ventura	arm64	4.6.0 alpha (2026-04-08 r89818)	4632
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for multiMiR on nebbiolo1

To the developers/maintainers of the multiMiR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/multiMiR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: multiMiR

Version: 1.33.0

Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data multiMiR

StartedAt: 2026-04-12 19:13:10 -0400 (Sun, 12 Apr 2026)

EndedAt: 2026-04-12 19:13:40 -0400 (Sun, 12 Apr 2026)

EllapsedTime: 30.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data multiMiR
###
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* checking for file ‘multiMiR/DESCRIPTION’ ... OK
* preparing ‘multiMiR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘multiMiR.Rmd’ using rmarkdown

Quitting from multiMiR.Rmd:287-324 [biocworkflow]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/purrr_error_indexed>
Error in `map()`:
ℹ In index: 2.
ℹ With name: mirtarbase.
Caused by error:
! Malformed encoding found in chunked-encoding
---
Backtrace:
     ▆
  1. ├─multiMiR::get_multimir(...)
  2. │ └─purrr::map(queries, query_multimir, org = org, add.link = add.link, use.tibble = use.tibble)
  3. │   └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
  4. │     ├─purrr:::with_indexed_errors(...)
  5. │     │ └─base::withCallingHandlers(...)
  6. │     ├─purrr:::call_with_cleanup(...)
  7. │     └─multiMiR (local) .f(.x[[i]], ...)
  8. │       └─multiMiR::search_multimir(x$query)
  9. │         └─multiMiR:::submit_request(...)
 10. │           └─RCurl::postForm(url, query = query, ..., .opts = myOpts)
 11. │             └─RCurl::.postForm(curl, .opts, .params, style)
 12. └─RCurl (local) `<fn>`(56L, "Malformed encoding found in chunked-encoding", TRUE)
 13.   └─base (local) fun(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'multiMiR.Rmd' failed with diagnostics:
ℹ In index: 2.
ℹ With name: mirtarbase.
Caused by error:
! Malformed encoding found in chunked-encoding
--- failed re-building ‘multiMiR.Rmd’

SUMMARY: processing the following file failed:
  ‘multiMiR.Rmd’

Error: Vignette re-building failed.
Execution halted