Multiple platform build/check report for BioC 3.23 - BUILD results for recountmethylation on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 alpha (2026-04-05 r89794)	4961
kjohnson3	macOS 13.7.7 Ventura	arm64	4.6.0 alpha (2026-04-08 r89818)	4690
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4627
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for recountmethylation on kunpeng2

To the developers/maintainers of the recountmethylation package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/recountmethylation.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: recountmethylation

Version: 1.21.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data recountmethylation

StartedAt: 2026-04-17 01:24:48 -0000 (Fri, 17 Apr 2026)

EndedAt: 2026-04-17 01:25:16 -0000 (Fri, 17 Apr 2026)

EllapsedTime: 28.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data recountmethylation
###
##############################################################################
##############################################################################


* checking for file ‘recountmethylation/DESCRIPTION’ ... OK
* preparing ‘recountmethylation’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cpg_probe_annotations.Rmd’ using rmarkdown

Quitting from cpg_probe_annotations.Rmd:27-31 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package 'bumphunter' could not be loaded
---
Backtrace:
    ▆
 1. └─base::sapply(libv, library, character.only = TRUE)
 2.   └─base::lapply(X = X, FUN = FUN, ...)
 3.     └─base (local) FUN(X[[i]], ...)
 4.       └─base::.getRequiredPackages2(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'cpg_probe_annotations.Rmd' failed with diagnostics:
package 'bumphunter' could not be loaded
--- failed re-building ‘cpg_probe_annotations.Rmd’

--- re-building ‘exporting_saving_data.Rmd’ using rmarkdown

Quitting from exporting_saving_data.Rmd:32-36 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package 'bumphunter' could not be loaded
---
Backtrace:
    ▆
 1. ├─BiocGenerics::sapply(libv, library, character.only = TRUE)
 2. └─base::sapply(libv, library, character.only = TRUE)
 3.   └─base::lapply(X = X, FUN = FUN, ...)
 4.     └─base (local) FUN(X[[i]], ...)
 5.       └─base::.getRequiredPackages2(...)
 6.         └─base::library(...)
 7.           └─base::.getRequiredPackages2(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'exporting_saving_data.Rmd' failed with diagnostics:
package 'bumphunter' could not be loaded
--- failed re-building ‘exporting_saving_data.Rmd’

--- re-building ‘recountmethylation_data_analyses.Rmd’ using rmarkdown

Quitting from recountmethylation_data_analyses.Rmd:27-38 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package 'bumphunter' could not be loaded
---
Backtrace:
    ▆
 1. ├─base::suppressMessages(library(minfi))
 2. │ └─base::withCallingHandlers(...)
 3. └─base::library(minfi)
 4.   └─base::.getRequiredPackages2(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'recountmethylation_data_analyses.Rmd' failed with diagnostics:
package 'bumphunter' could not be loaded
--- failed re-building ‘recountmethylation_data_analyses.Rmd’

--- re-building ‘recountmethylation_glint.Rmd’ using rmarkdown
--- finished re-building ‘recountmethylation_glint.Rmd’

--- re-building ‘recountmethylation_pwrewas.Rmd’ using rmarkdown
--- finished re-building ‘recountmethylation_pwrewas.Rmd’

--- re-building ‘recountmethylation_search_index.Rmd’ using rmarkdown
--- finished re-building ‘recountmethylation_search_index.Rmd’

--- re-building ‘recountmethylation_users_guide.Rmd’ using rmarkdown

Quitting from recountmethylation_users_guide.Rmd:28-37 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package 'bumphunter' could not be loaded
---
Backtrace:
    ▆
 1. ├─base::suppressMessages(library(minfi))
 2. │ └─base::withCallingHandlers(...)
 3. └─base::library(minfi)
 4.   └─base::.getRequiredPackages2(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'recountmethylation_users_guide.Rmd' failed with diagnostics:
package 'bumphunter' could not be loaded
--- failed re-building ‘recountmethylation_users_guide.Rmd’

SUMMARY: processing the following files failed:
  ‘cpg_probe_annotations.Rmd’ ‘exporting_saving_data.Rmd’
  ‘recountmethylation_data_analyses.Rmd’
  ‘recountmethylation_users_guide.Rmd’

Error: Vignette re-building failed.
Execution halted