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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data zellkonverter
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* checking for file ‘zellkonverter/DESCRIPTION’ ... OK
* preparing ‘zellkonverter’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘zellkonverter.Rmd’ using rmarkdown
Requirement already satisfied: pip in /home/biocbuild/.cache/R/basilisk/1.23.0/zellkonverter/1.21.2/zellkonverterAnnDataEnv-0.12.3/lib/python3.14/site-packages (25.2)
Collecting pip
  Using cached pip-26.0.1-py3-none-any.whl.metadata (4.7 kB)
Collecting wheel
  Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
Collecting setuptools
  Using cached setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB)
Collecting packaging>=24.0 (from wheel)
  Using cached packaging-26.1-py3-none-any.whl.metadata (3.5 kB)
Using cached pip-26.0.1-py3-none-any.whl (1.8 MB)
Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
Using cached setuptools-82.0.1-py3-none-any.whl (1.0 MB)
Using cached packaging-26.1-py3-none-any.whl (95 kB)
Installing collected packages: setuptools, pip, packaging, wheel
  Attempting uninstall: pip
    Found existing installation: pip 25.2
    Uninstalling pip-25.2:
      Successfully uninstalled pip-25.2

Successfully installed packaging-26.1 pip-26.0.1 setuptools-82.0.1 wheel-0.46.3
Collecting anndata==0.12.3
  Using cached anndata-0.12.3-py3-none-any.whl.metadata (9.9 kB)
Collecting h5py==3.15.1
  Using cached h5py-3.15.1-cp314-cp314-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl.metadata (3.0 kB)
Collecting natsort==8.4.0
  Using cached natsort-8.4.0-py3-none-any.whl.metadata (21 kB)
Collecting numpy==2.3.4
  Using cached numpy-2.3.4-cp314-cp314-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl.metadata (62 kB)
Collecting pandas==2.3.3
  Using cached pandas-2.3.3-cp314-cp314-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl.metadata (91 kB)
Collecting scipy==1.16.2
  Using cached scipy-1.16.2-cp314-cp314-manylinux2014_aarch64.manylinux_2_17_aarch64.whl.metadata (62 kB)
Collecting array-api-compat>=1.7.1 (from anndata==0.12.3)
  Downloading array_api_compat-1.14.0-py3-none-any.whl.metadata (2.5 kB)
Collecting legacy-api-wrap (from anndata==0.12.3)
  Using cached legacy_api_wrap-1.5-py3-none-any.whl.metadata (2.2 kB)
Requirement already satisfied: packaging>=24.2 in /home/biocbuild/.cache/R/basilisk/1.23.0/zellkonverter/1.21.2/zellkonverterAnnDataEnv-0.12.3/lib/python3.14/site-packages (from anndata==0.12.3) (26.1)
Collecting zarr!=3.0.*,>=2.18.7 (from anndata==0.12.3)
  Downloading zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB)
Collecting python-dateutil>=2.8.2 (from pandas==2.3.3)
  Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
Collecting pytz>=2020.1 (from pandas==2.3.3)
  Using cached pytz-2026.1.post1-py2.py3-none-any.whl.metadata (22 kB)
Collecting tzdata>=2022.7 (from pandas==2.3.3)
  Using cached tzdata-2026.1-py2.py3-none-any.whl.metadata (1.4 kB)
Collecting six>=1.5 (from python-dateutil>=2.8.2->pandas==2.3.3)
  Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
Collecting donfig>=0.8 (from zarr!=3.0.*,>=2.18.7->anndata==0.12.3)
  Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
Collecting google-crc32c>=1.5 (from zarr!=3.0.*,>=2.18.7->anndata==0.12.3)
  Using cached google_crc32c-1.8.0-cp314-cp314-manylinux2014_aarch64.manylinux_2_17_aarch64.whl.metadata (1.7 kB)
Collecting numcodecs>=0.14 (from zarr!=3.0.*,>=2.18.7->anndata==0.12.3)
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Collecting typing-extensions>=4.12 (from zarr!=3.0.*,>=2.18.7->anndata==0.12.3)
  Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
Collecting pyyaml (from donfig>=0.8->zarr!=3.0.*,>=2.18.7->anndata==0.12.3)
  Using cached pyyaml-6.0.3-cp314-cp314-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl.metadata (2.4 kB)
Using cached anndata-0.12.3-py3-none-any.whl (169 kB)
Using cached h5py-3.15.1-cp314-cp314-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl (4.9 MB)
Using cached natsort-8.4.0-py3-none-any.whl (38 kB)
Using cached numpy-2.3.4-cp314-cp314-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl (14.3 MB)
Using cached pandas-2.3.3-cp314-cp314-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl (11.8 MB)
Using cached scipy-1.16.2-cp314-cp314-manylinux2014_aarch64.manylinux_2_17_aarch64.whl (33.4 MB)
Downloading array_api_compat-1.14.0-py3-none-any.whl (60 kB)
Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
Using cached pytz-2026.1.post1-py2.py3-none-any.whl (510 kB)
Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
Using cached tzdata-2026.1-py2.py3-none-any.whl (348 kB)
Downloading zarr-3.1.6-py3-none-any.whl (295 kB)
Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
Using cached google_crc32c-1.8.0-cp314-cp314-manylinux2014_aarch64.manylinux_2_17_aarch64.whl (33 kB)
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Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
Using cached legacy_api_wrap-1.5-py3-none-any.whl (10 kB)
Using cached pyyaml-6.0.3-cp314-cp314-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (766 kB)
Installing collected packages: pytz, tzdata, typing-extensions, six, pyyaml, numpy, natsort, legacy-api-wrap, google-crc32c, array-api-compat, scipy, python-dateutil, numcodecs, h5py, donfig, zarr, pandas, anndata

Successfully installed anndata-0.12.3 array-api-compat-1.14.0 donfig-0.8.1.post1 google-crc32c-1.8.0 h5py-3.15.1 legacy-api-wrap-1.5 natsort-8.4.0 numcodecs-0.16.5 numpy-2.3.4 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2026.1.post1 pyyaml-6.0.3 scipy-1.16.2 six-1.17.0 typing-extensions-4.15.0 tzdata-2026.1 zarr-3.1.6
<sys>:0: FutureWarning: Use varm (e.g. `k in adata.varm` or `adata.varm.keys() | {'u'}`) instead of AnnData.varm_keys, AnnData.varm_keys is deprecated and will be removed in the future.
<sys>:0: FutureWarning: Use obsm (e.g. `k in adata.obsm` or `adata.obsm.keys() | {'u'}`) instead of AnnData.obsm_keys, AnnData.obsm_keys is deprecated and will be removed in the future.

Quitting from zellkonverter.Rmd:57-63 [write]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'scRNAseq' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'AnnotationHub'
---
Backtrace:
    ▆
 1. └─base::library(scRNAseq)
 2.   └─base::tryCatch(...)
 3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 4.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 5.         └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'zellkonverter.Rmd' failed with diagnostics:
package or namespace load failed for 'scRNAseq' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'AnnotationHub'
--- failed re-building ‘zellkonverter.Rmd’

SUMMARY: processing the following file failed:
  ‘zellkonverter.Rmd’

Error: Vignette re-building failed.
Execution halted