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This page was generated on 2026-04-24 11:33 -0400 (Fri, 24 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4800
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Package 660/2351HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EnrichDO 1.5.1  (landing page)
Hongyu Fu
Snapshot Date: 2026-04-23 13:45 -0400 (Thu, 23 Apr 2026)
git_url: https://git.bioconductor.org/packages/EnrichDO
git_branch: devel
git_last_commit: ebc1cbf
git_last_commit_date: 2026-04-01 01:54:51 -0400 (Wed, 01 Apr 2026)
nebbiolo2Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
See other builds for EnrichDO in R Universe.

CHECK results for EnrichDO on nebbiolo2

To the developers/maintainers of the EnrichDO package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EnrichDO.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: EnrichDO
Version: 1.5.1
Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD check --install=check:EnrichDO.install-out.txt --library=/home/biocbuild/bbs-3.24-bioc/R/site-library --timings EnrichDO_1.5.1.tar.gz
StartedAt: 2026-04-23 23:14:22 -0400 (Thu, 23 Apr 2026)
EndedAt: 2026-04-23 23:20:24 -0400 (Thu, 23 Apr 2026)
EllapsedTime: 362.4 seconds
RetCode: 0
Status:   OK  
CheckDir: EnrichDO.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD check --install=check:EnrichDO.install-out.txt --library=/home/biocbuild/bbs-3.24-bioc/R/site-library --timings EnrichDO_1.5.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.24-bioc/meat/EnrichDO.Rcheck’
* using R version 4.6.0 RC (2026-04-17 r89917)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-04-24 03:14:22 UTC
* checking for file ‘EnrichDO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘EnrichDO’ version ‘1.5.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EnrichDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
viewSummaryResult 11.482  0.246  11.729
viewDetailResult  11.161  0.485  11.645
show-methods       8.166  0.042   8.208
drawPointGraph     5.231  0.060   5.291
doEnrich           4.872  0.132   5.004
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

EnrichDO.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD INSTALL EnrichDO
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.24-bioc/R/site-library’
* installing *source* package ‘EnrichDO’ ...
** this is package ‘EnrichDO’ version ‘1.5.1’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (EnrichDO)

Tests output

EnrichDO.Rcheck/tests/testthat.Rout


R version 4.6.0 RC (2026-04-17 r89917) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # This file is part of the standard setup for testthat.  It is recommended that you do not modify it.  Where should you do additional
> # test configuration?  Learn more about the roles of various files in: *
> # https://r-pkgs.org/testing-design.html#sec-tests-files-overview * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(EnrichDO)
> 
> test_check("EnrichDO")
		 -- Descending rights test-- 

LEVEL: 13	1 nodes	72 genes to be scored
LEVEL: 12	2 nodes	457 genes to be scored
LEVEL: 11	3 nodes	907 genes to be scored
LEVEL: 10	13 nodes	2279 genes to be scored
LEVEL: 9	54 nodes	6504 genes to be scored
LEVEL: 8	130 nodes	9483 genes to be scored
LEVEL: 7	198 nodes	11209 genes to be scored
LEVEL: 6	220 nodes	12574 genes to be scored
LEVEL: 5	198 nodes	12936 genes to be scored
LEVEL: 4	103 nodes	12824 genes to be scored
LEVEL: 3	30 nodes	11683 genes to be scored
LEVEL: 2	5 nodes	8032 genes to be scored
LEVEL: 1	0 nodes	0 genes to be scored
		 -- Descending rights test-- 

LEVEL: 13	1 nodes	72 genes to be scored
LEVEL: 12	2 nodes	457 genes to be scored
LEVEL: 11	3 nodes	907 genes to be scored
LEVEL: 10	13 nodes	2279 genes to be scored
LEVEL: 9	54 nodes	6504 genes to be scored
LEVEL: 8	130 nodes	9483 genes to be scored
LEVEL: 7	198 nodes	11209 genes to be scored
LEVEL: 6	220 nodes	12574 genes to be scored
LEVEL: 5	198 nodes	12936 genes to be scored
LEVEL: 4	103 nodes	12824 genes to be scored
LEVEL: 3	30 nodes	11683 genes to be scored
LEVEL: 2	5 nodes	8032 genes to be scored
		 -- Descending rights test-- 

LEVEL: 13	1 nodes	72 genes to be scored
LEVEL: 12	2 nodes	457 genes to be scored
LEVEL: 11	3 nodes	907 genes to be scored
LEVEL: 10	13 nodes	2279 genes to be scored
LEVEL: 9	54 nodes	6504 genes to be scored
LEVEL: 8	130 nodes	9483 genes to be scored
LEVEL: 7	198 nodes	11209 genes to be scored
LEVEL: 6	220 nodes	12574 genes to be scored
LEVEL: 5	198 nodes	12936 genes to be scored
LEVEL: 4	103 nodes	12824 genes to be scored
LEVEL: 3	30 nodes	11683 genes to be scored
		 -- Descending rights test-- 

LEVEL: 13	1 nodes	72 genes to be scored
LEVEL: 12	2 nodes	457 genes to be scored
LEVEL: 11	3 nodes	907 genes to be scored
LEVEL: 10	13 nodes	2279 genes to be scored
LEVEL: 9	54 nodes	6504 genes to be scored
LEVEL: 8	130 nodes	9483 genes to be scored
LEVEL: 7	198 nodes	11209 genes to be scored
LEVEL: 6	220 nodes	12574 genes to be scored
LEVEL: 5	198 nodes	12936 genes to be scored
LEVEL: 4	103 nodes	12824 genes to be scored
		 -- Descending rights test-- 

LEVEL: 13	1 nodes	72 genes to be scored
LEVEL: 12	2 nodes	457 genes to be scored
LEVEL: 11	3 nodes	907 genes to be scored
LEVEL: 10	13 nodes	2279 genes to be scored
LEVEL: 9	54 nodes	6504 genes to be scored
LEVEL: 8	130 nodes	9483 genes to be scored
LEVEL: 7	198 nodes	11209 genes to be scored
LEVEL: 6	220 nodes	12574 genes to be scored
LEVEL: 5	198 nodes	12936 genes to be scored
		 -- Descending rights test-- 

LEVEL: 13	0 nodes	0 genes to be scored
LEVEL: 12	0 nodes	0 genes to be scored
LEVEL: 11	0 nodes	0 genes to be scored
LEVEL: 10	0 nodes	0 genes to be scored
LEVEL: 9	15 nodes	533 genes to be scored
LEVEL: 8	26 nodes	985 genes to be scored
LEVEL: 7	38 nodes	1187 genes to be scored
LEVEL: 6	47 nodes	1382 genes to be scored
LEVEL: 5	32 nodes	1025 genes to be scored
LEVEL: 4	8 nodes	288 genes to be scored
LEVEL: 3	2 nodes	120 genes to be scored
LEVEL: 2	0 nodes	0 genes to be scored
LEVEL: 1	0 nodes	0 genes to be scored
		 -- Descending rights test-- 

LEVEL: 13	1 nodes	72 genes to be scored
LEVEL: 12	2 nodes	457 genes to be scored
LEVEL: 11	3 nodes	907 genes to be scored
LEVEL: 10	13 nodes	2279 genes to be scored
LEVEL: 9	54 nodes	6504 genes to be scored
LEVEL: 8	130 nodes	9483 genes to be scored
LEVEL: 7	198 nodes	11209 genes to be scored
LEVEL: 6	220 nodes	12574 genes to be scored
LEVEL: 5	198 nodes	12936 genes to be scored
LEVEL: 4	103 nodes	12824 genes to be scored
LEVEL: 3	30 nodes	11683 genes to be scored
LEVEL: 2	5 nodes	8032 genes to be scored
LEVEL: 1	0 nodes	0 genes to be scored
		 -- Descending rights test-- 

LEVEL: 13	1 nodes	72 genes to be scored
LEVEL: 12	2 nodes	457 genes to be scored
LEVEL: 11	3 nodes	907 genes to be scored
LEVEL: 10	13 nodes	2279 genes to be scored
LEVEL: 9	54 nodes	6504 genes to be scored
LEVEL: 8	130 nodes	9483 genes to be scored
LEVEL: 7	198 nodes	11209 genes to be scored
LEVEL: 6	220 nodes	12574 genes to be scored
LEVEL: 5	198 nodes	12936 genes to be scored
LEVEL: 4	103 nodes	12824 genes to be scored
LEVEL: 3	30 nodes	11683 genes to be scored
LEVEL: 2	5 nodes	8032 genes to be scored
LEVEL: 1	0 nodes	0 genes to be scored
		 -- Descending rights test-- 

LEVEL: 13	1 nodes	72 genes to be scored
LEVEL: 12	2 nodes	457 genes to be scored
LEVEL: 11	3 nodes	907 genes to be scored
LEVEL: 10	13 nodes	2279 genes to be scored
LEVEL: 9	54 nodes	6504 genes to be scored
LEVEL: 8	130 nodes	9483 genes to be scored
LEVEL: 7	198 nodes	11209 genes to be scored
LEVEL: 6	220 nodes	12574 genes to be scored
LEVEL: 5	198 nodes	12936 genes to be scored
LEVEL: 4	103 nodes	12824 genes to be scored
LEVEL: 3	30 nodes	11683 genes to be scored
LEVEL: 2	5 nodes	8032 genes to be scored
LEVEL: 1	0 nodes	0 genes to be scored
		 -- Descending rights test-- 

LEVEL: 13	1 nodes	72 genes to be scored
LEVEL: 12	2 nodes	457 genes to be scored
LEVEL: 11	3 nodes	907 genes to be scored
LEVEL: 10	13 nodes	2279 genes to be scored
LEVEL: 9	54 nodes	6504 genes to be scored
LEVEL: 8	130 nodes	9483 genes to be scored
LEVEL: 7	198 nodes	11209 genes to be scored
LEVEL: 6	220 nodes	12574 genes to be scored
LEVEL: 5	198 nodes	12936 genes to be scored
LEVEL: 4	103 nodes	12824 genes to be scored
LEVEL: 3	30 nodes	11683 genes to be scored
LEVEL: 2	5 nodes	8032 genes to be scored
LEVEL: 1	0 nodes	0 genes to be scored
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ]
> 
> proc.time()
   user  system elapsed 
166.469   0.947 167.410

Example timings

EnrichDO.Rcheck/EnrichDO-Ex.timings

nameusersystemelapsed
convDraw2.4630.0952.559
doEnrich4.8720.1325.004
drawBarGraph4.8930.0704.963
drawGraphViz4.8450.0334.878
drawHeatmap4.5120.0804.591
drawPointGraph5.2310.0605.291
show-methods8.1660.0428.208
showDoTerms0.0020.0000.001
viewDetailResult11.161 0.48511.645
viewSummaryResult11.482 0.24611.729
writeResult4.8090.0254.835