| Back to Build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-04-24 11:33 -0400 (Fri, 24 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4800 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1477/2351 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OGRE 1.15.0 (landing page) Sven Berres
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for OGRE in R Universe. | ||||||||||||||
|
To the developers/maintainers of the OGRE package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OGRE.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: OGRE |
| Version: 1.15.0 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 OGRE |
| StartedAt: 2026-04-23 19:07:22 -0400 (Thu, 23 Apr 2026) |
| EndedAt: 2026-04-23 19:08:34 -0400 (Thu, 23 Apr 2026) |
| EllapsedTime: 71.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 OGRE
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* checking for file ‘OGRE/DESCRIPTION’ ... OK
* preparing ‘OGRE’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘OGRE.Rmd’ using rmarkdown
Quitting from OGRE.Rmd:128-131 [gvizPlot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `errorHandler()`:
---
Backtrace:
▆
1. └─OGRE::gvizPlot(...)
2. └─Gviz::IdeogramTrack(genome = "hg38", chromosome = chr)
3. └─methods::new(...)
4. ├─methods::initialize(value, ...)
5. └─Gviz::initialize(value, ...)
6. └─Gviz (local) .local(.Object, ...)
7. └─Gviz:::.cacheGenomes(genome = genome)
8. └─Gviz::.doCache(...)
9. ├─BiocGenerics::eval(expression, envir = callEnv)
10. ├─base::eval(expression, envir = callEnv)
11. │ └─base::eval(expression, envir = callEnv)
12. └─rtracklayer::ucscGenomes()
13. ├─restfulr::read(url$list$ucscGenomes)
14. └─restfulr::read(url$list$ucscGenomes)
15. ├─base::tryCatch(...)
16. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
17. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
18. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
19. └─x@protocol$read(x, cacheInfo)
20. └─restfulr:::handleResponse(content, reader, cache.info, x@errorHandler)
21. └─restfulr (local) errorHandler(responseError)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'OGRE.Rmd' failed with diagnostics:
--- failed re-building ‘OGRE.Rmd’
SUMMARY: processing the following file failed:
‘OGRE.Rmd’
Error: Vignette re-building failed.
Execution halted