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This page was generated on 2026-04-24 11:33 -0400 (Fri, 24 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4800
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2123/2351HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
stageR 1.33.0  (landing page)
Koen Van den Berge
Snapshot Date: 2026-04-23 13:45 -0400 (Thu, 23 Apr 2026)
git_url: https://git.bioconductor.org/packages/stageR
git_branch: devel
git_last_commit: d375191
git_last_commit_date: 2025-10-29 10:41:45 -0400 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    ERROR  skipped
See other builds for stageR in R Universe.

BUILD results for stageR on nebbiolo2

To the developers/maintainers of the stageR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/stageR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: stageR
Version: 1.33.0
Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 stageR
StartedAt: 2026-04-23 20:24:33 -0400 (Thu, 23 Apr 2026)
EndedAt: 2026-04-23 20:25:14 -0400 (Thu, 23 Apr 2026)
EllapsedTime: 40.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 stageR
###
##############################################################################
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* checking for file ‘stageR/DESCRIPTION’ ... OK
* preparing ‘stageR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘stageRVignette.Rmd’ using rmarkdown

Quitting from stageRVignette.Rmd:117-123 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `topTableF()`:
! could not find function "topTableF"
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'stageRVignette.Rmd' failed with diagnostics:
could not find function "topTableF"
--- failed re-building ‘stageRVignette.Rmd’

SUMMARY: processing the following file failed:
  ‘stageRVignette.Rmd’

Error: Vignette re-building failed.
Execution halted