| Back to Build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-04-24 11:33 -0400 (Fri, 24 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4800 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2346/2351 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| zellkonverter 1.21.2 (landing page) Luke Zappia
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for zellkonverter in R Universe. | ||||||||||||||
|
To the developers/maintainers of the zellkonverter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/zellkonverter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: zellkonverter |
| Version: 1.21.2 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 zellkonverter |
| StartedAt: 2026-04-23 20:51:47 -0400 (Thu, 23 Apr 2026) |
| EndedAt: 2026-04-23 20:52:12 -0400 (Thu, 23 Apr 2026) |
| EllapsedTime: 25.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 zellkonverter
###
##############################################################################
##############################################################################
* checking for file ‘zellkonverter/DESCRIPTION’ ... OK
* preparing ‘zellkonverter’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘zellkonverter.Rmd’ using rmarkdown
Quitting from zellkonverter.Rmd:41-50 [read]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `lock()`:
! Cannot open lock file: No such file or directory
---
Backtrace:
▆
1. └─zellkonverter::readH5AD(example_h5ad)
2. └─basilisk::basiliskRun(...)
3. └─basilisk::basiliskStart(...)
4. └─basilisk::obtainEnvironmentPath(env)
5. └─basilisk::lockExternalDir(exdir, exclusive = FALSE)
6. └─dir.expiry::lockDirectory(path, ...)
7. └─filelock::lock(plock, exclusive = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'zellkonverter.Rmd' failed with diagnostics:
Cannot open lock file: No such file or directory
--- failed re-building ‘zellkonverter.Rmd’
SUMMARY: processing the following file failed:
‘zellkonverter.Rmd’
Error: Vignette re-building failed.
Execution halted