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BioC 3.3: CHECK report for metabomxtr on windows2.bioconductor.org

This page was generated on 2015-10-27 12:15:42 -0400 (Tue, 27 Oct 2015).

Package 620/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metabomxtr 1.5.0
Michael Nodzenski
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/metabomxtr
Last Changed Rev: 109592 / Revision: 109948
Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository

Summary

Package: metabomxtr
Version: 1.5.0
Command: rm -rf metabomxtr.buildbin-libdir metabomxtr.Rcheck && mkdir metabomxtr.buildbin-libdir metabomxtr.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=metabomxtr.buildbin-libdir metabomxtr_1.5.0.tar.gz >metabomxtr.Rcheck\00install.out 2>&1 && cp metabomxtr.Rcheck\00install.out metabomxtr-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=metabomxtr.buildbin-libdir --install="check:metabomxtr-install.out" --force-multiarch --no-vignettes --timings metabomxtr_1.5.0.tar.gz
StartedAt: 2015-10-27 03:58:14 -0400 (Tue, 27 Oct 2015)
EndedAt: 2015-10-27 03:59:09 -0400 (Tue, 27 Oct 2015)
EllapsedTime: 54.5 seconds
RetCode: 0
Status:  OK  
CheckDir: metabomxtr.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf metabomxtr.buildbin-libdir metabomxtr.Rcheck && mkdir metabomxtr.buildbin-libdir metabomxtr.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=metabomxtr.buildbin-libdir metabomxtr_1.5.0.tar.gz >metabomxtr.Rcheck\00install.out 2>&1 && cp metabomxtr.Rcheck\00install.out metabomxtr-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=metabomxtr.buildbin-libdir --install="check:metabomxtr-install.out" --force-multiarch --no-vignettes --timings metabomxtr_1.5.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'c:/biocbld/bbs-3.3-bioc/meat/metabomxtr.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'metabomxtr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'metabomxtr' version '1.5.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'metabomxtr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [5s] OK
** running examples for arch 'x64' ... [5s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

metabomxtr.Rcheck/00install.out:


install for i386

* installing *source* package 'metabomxtr' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'metabomxtr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'metabomxtr' as metabomxtr_1.5.0.zip
* DONE (metabomxtr)

metabomxtr.Rcheck/examples_i386/metabomxtr-Ex.timings:

nameusersystemelapsed
metabomxtr-package0.970.020.98
mixnorm0.440.000.44
mxtrmod2.030.012.05
mxtrmodLL000
mxtrmodLRT0.450.000.45
mxtrmodstart0.020.000.02

metabomxtr.Rcheck/examples_x64/metabomxtr-Ex.timings:

nameusersystemelapsed
metabomxtr-package101
mixnorm0.390.000.39
mxtrmod1.670.021.68
mxtrmodLL000
mxtrmodLRT0.730.000.74
mxtrmodstart0.020.000.01