DNAcopy 1.46.0
Venkatraman E. Seshan
| Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/DNAcopy | | Last Changed Rev: 117079 / Revision: 122332 | | Last Changed Date: 2016-05-03 14:20:18 -0700 (Tue, 03 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | [ OK ] | OK | OK | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf DNAcopy.buildbin-libdir && mkdir DNAcopy.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/DNAcopy_1.46.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=DNAcopy.buildbin-libdir --merge-multiarch DNAcopy_1.46.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL DNAcopy_1.46.0.zip && rm DNAcopy_1.46.0.tar.gz DNAcopy_1.46.0.zip
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install for i386
* installing *source* package 'DNAcopy' ...
** libs
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c cbsWtstats.f -o cbsWtstats.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c cbststats.f -o cbststats.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c changepoints-wtd.f -o changepoints-wtd.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c changepoints.f -o changepoints.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c esegment.f -o esegment.o
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c flchoose.c -o flchoose.o
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c fphyper.c -o fphyper.o
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c fpnorm.c -o fpnorm.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c getbdry.f -o getbdry.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c prune.f -o prune.o
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c rshared.c -o rshared.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c segmentp.f -o segmentp.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c smoothCNA.f -o smoothCNA.o
C:/Rtools/mingw_32/bin/gfortran -O3 -mtune=core2 -c tailprobs.f -o tailprobs.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o DNAcopy.dll tmp.def cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -Lc:/local323/lib/i386 -Lc:/local323/lib -lgfortran -lm -lquadmath -LE:/biocbld/BBS-3˜1.3-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-3.3-bioc/meat/DNAcopy.buildbin-libdir/DNAcopy/libs/i386
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'DNAcopy' ...
** libs
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c cbsWtstats.f -o cbsWtstats.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c cbststats.f -o cbststats.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c changepoints-wtd.f -o changepoints-wtd.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c changepoints.f -o changepoints.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c esegment.f -o esegment.o
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c flchoose.c -o flchoose.o
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c fphyper.c -o fphyper.o
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c fpnorm.c -o fpnorm.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c getbdry.f -o getbdry.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c prune.f -o prune.o
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c rshared.c -o rshared.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c segmentp.f -o segmentp.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c smoothCNA.f -o smoothCNA.o
C:/Rtools/mingw_64/bin/gfortran -O2 -mtune=core2 -c tailprobs.f -o tailprobs.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o DNAcopy.dll tmp.def cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -Lc:/local323/lib/x64 -Lc:/local323/lib -lgfortran -lm -lquadmath -LE:/biocbld/BBS-3˜1.3-B/R/bin/x64 -lR
installing to E:/biocbld/bbs-3.3-bioc/meat/DNAcopy.buildbin-libdir/DNAcopy/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DNAcopy' as DNAcopy_1.46.0.zip
* DONE (DNAcopy)
* installing to library 'E:/biocbld/bbs-3.3-bioc/R/library'
package 'DNAcopy' successfully unpacked and MD5 sums checked