ELMER 1.3.0
Lijing Yao
| Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ELMER | | Last Changed Rev: 109592 / Revision: 109948 | | Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015) |
| linux2.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | ERROR | skipped | | |
| windows2.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | [ ERROR ] | skipped | skipped | |
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### Running command:
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### chmod a+r ELMER -R && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ELMER
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* checking for file 'ELMER/DESCRIPTION' ... OK
* preparing 'ELMER':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"c:/biocbld/bbs-3.3-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
ERROR
trying URL 'https://dl.dropboxusercontent.com/u/61961845/ELMER.example.tar.gz'
Content type 'application/octet-stream' length 197643859 bytes (188.5 MB)
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downloaded 188.5 MB
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport,
clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply,
parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame,
as.vector, cbind, colnames, do.call, duplicated, eval, evalq, get, grep,
grepl, intersect, is.unsorted, lapply, lengths, mapply, match, mget, order,
paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unlist, unsplit
Welcome to Bioconductor
Vignettes contain introductory material; view with 'browseVignettes()'. To
cite Bioconductor, see 'citation("Biobase")', and for packages
'citation("pkgname")'.
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
locfit 1.5-9.1 2013-03-22
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Loading required package: DBI
Now getting the GODb Object directly
Now getting the OrgDb Object directly
Now getting the TxDb Object directly
Attaching package: 'ELMER'
The following objects are masked from 'package:minfi':
getMeth, getProbeInfo
Warning: running command '"C:\PROGRA˜2\MIKTEX˜1.9\miktex\bin\texi2dvi.exe" --quiet --pdf "vignettes.tex" --max-iterations=20 -I "c:/biocbld/bbs-3.3-bioc/R/share/texmf/tex/latex" -I "c:/biocbld/bbs-3.3-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: running 'texi2dvi' on 'vignettes.tex' failed
LaTeX errors:
!pdfTeX error: pdflatex.EXE (file c:/biocbld/bbs-3.3-bioc/tmpdir/Rtmp0w88DA/Rbu
ild1b685a7546ba/ELMER/vignettes/figure/figure4-1.pdf): PDF inclusion: required
page does not exist <0>
==> Fatal error occurred, no output PDF file produced!
Execution halted