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BioC 3.3: CHECK report for RMassBank on moscato2

This page was generated on 2016-10-13 12:50:49 -0700 (Thu, 13 Oct 2016).

Package 983/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RMassBank 2.0.0
RMassBank at Eawag
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/RMassBank
Last Changed Rev: 117079 / Revision: 122332
Last Changed Date: 2016-05-03 14:20:18 -0700 (Tue, 03 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  ERROR  skipped 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ ERROR ] ERROR 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: RMassBank
Version: 2.0.0
Command: rm -rf RMassBank.buildbin-libdir RMassBank.Rcheck && mkdir RMassBank.buildbin-libdir RMassBank.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RMassBank.buildbin-libdir RMassBank_2.0.0.tar.gz >RMassBank.Rcheck\00install.out 2>&1 && cp RMassBank.Rcheck\00install.out RMassBank-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=RMassBank.buildbin-libdir --install="check:RMassBank-install.out" --force-multiarch --no-vignettes --timings RMassBank_2.0.0.tar.gz
StartedAt: 2016-10-13 08:18:03 -0700 (Thu, 13 Oct 2016)
EndedAt: 2016-10-13 08:18:15 -0700 (Thu, 13 Oct 2016)
EllapsedTime: 12.1 seconds
RetCode: 1
Status:  ERROR  
CheckDir: RMassBank.Rcheck
Warnings: NA

Command output

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###
### Running command:
###
###   rm -rf RMassBank.buildbin-libdir RMassBank.Rcheck && mkdir RMassBank.buildbin-libdir RMassBank.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RMassBank.buildbin-libdir RMassBank_2.0.0.tar.gz >RMassBank.Rcheck\00install.out 2>&1 && cp RMassBank.Rcheck\00install.out RMassBank-install.out  && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=RMassBank.buildbin-libdir --install="check:RMassBank-install.out" --force-multiarch --no-vignettes --timings RMassBank_2.0.0.tar.gz
###
##############################################################################
##############################################################################

RMassBank.Rcheck/00install.out:


install for i386

* installing *source* package 'RMassBank' ...
** R
** inst
** preparing package for lazy loading
Error : .onLoad failed in loadNamespace() for 'rcdk', details:
  call: fun(libname, pkgname)
  error: 
=================
=================
This version of rCDK uses a CDK library that requires Java 1.8 or greater.

Please install Java 1.8 and let R know which Java to use by running the config tool:

sudo R CMD javareconf

Then you will need to re-install rJava.

# re install fromfrom R
# install.packages('rJava', type='source')

=================
=================
         
ERROR: lazy loading failed for package 'RMassBank'
* removing 'E:/biocbld/bbs-3.3-bioc/meat/RMassBank.buildbin-libdir/RMassBank'
Warning: running command 'E:/biocbld/bbs-3.3-bioc/R/bin/i386/Rcmd.exe INSTALL --library=RMassBank.buildbin-libdir RMassBank_2.0.0.tar.gz --no-multiarch' had status 1