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BioC 3.3: INSTALL report for SomaticSignatures on moscato2

This page was generated on 2016-10-13 12:52:13 -0700 (Thu, 13 Oct 2016).

Package 1097/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SomaticSignatures 2.8.4
Julian Gehring
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/SomaticSignatures
Last Changed Rev: 118709 / Revision: 122332
Last Changed Date: 2016-06-17 01:04:46 -0700 (Fri, 17 Jun 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SomaticSignatures
Version: 2.8.4
Command: rm -rf SomaticSignatures.buildbin-libdir && mkdir SomaticSignatures.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/SomaticSignatures_2.8.4.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=SomaticSignatures.buildbin-libdir --merge-multiarch SomaticSignatures_2.8.4.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL SomaticSignatures_2.8.4.zip && rm SomaticSignatures_2.8.4.tar.gz SomaticSignatures_2.8.4.zip
StartedAt: 2016-10-12 19:23:38 -0700 (Wed, 12 Oct 2016)
EndedAt: 2016-10-12 19:26:19 -0700 (Wed, 12 Oct 2016)
EllapsedTime: 160.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf SomaticSignatures.buildbin-libdir && mkdir SomaticSignatures.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/SomaticSignatures_2.8.4.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=SomaticSignatures.buildbin-libdir --merge-multiarch SomaticSignatures_2.8.4.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL SomaticSignatures_2.8.4.zip  && rm SomaticSignatures_2.8.4.tar.gz SomaticSignatures_2.8.4.zip
###
##############################################################################
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install for i386

* installing *source* package 'SomaticSignatures' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'ggbio'
** help
*** installing help indices
** building package indices
** installing vignettes
   'SomaticSignatures-vignette.Rhtml' 
** testing if installed package can be loaded
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'ggbio'

install for x64

* installing *source* package 'SomaticSignatures' ...
** testing if installed package can be loaded
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'ggbio'
* MD5 sums
packaged installation of 'SomaticSignatures' as SomaticSignatures_2.8.4.zip
* DONE (SomaticSignatures)
* installing to library 'E:/biocbld/bbs-3.3-bioc/R/library'
package 'SomaticSignatures' successfully unpacked and MD5 sums checked