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BioC 3.3: BUILD BIN report for contiBAIT on morelia

This page was generated on 2016-04-21 13:27:48 -0700 (Thu, 21 Apr 2016).

Package 238/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
contiBAIT 0.99.4
Kieran O'Neill
Snapshot Date: 2016-04-20 17:20:35 -0700 (Wed, 20 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/contiBAIT
Last Changed Rev: 113778 / Revision: 116626
Last Changed Date: 2016-02-18 14:39:17 -0800 (Thu, 18 Feb 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: contiBAIT
Version: 0.99.4
Command: rm -rf contiBAIT.buildbin-libdir && mkdir contiBAIT.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh contiBAIT_0.99.4.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R contiBAIT.buildbin-libdir
StartedAt: 2016-04-21 08:48:54 -0700 (Thu, 21 Apr 2016)
EndedAt: 2016-04-21 08:49:25 -0700 (Thu, 21 Apr 2016)
EllapsedTime: 31.3 seconds
RetCode: 0
Status:  OK 
PackageFile: contiBAIT_0.99.4.tgz
PackageFileSize: 3.916 MiB

Command output

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###
### Running command:
###
###   rm -rf contiBAIT.buildbin-libdir && mkdir contiBAIT.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh contiBAIT_0.99.4.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R contiBAIT.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=contiBAIT.buildbin-libdir contiBAIT_0.99.4.tar.gz'
>>>>>>> 

* installing *source* package ‘contiBAIT’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/BH/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c computeSim.cpp -o computeSim.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/BH/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c orderContigsGreedy.cpp -o orderContigsGreedy.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o contiBAIT.so computeSim.o orderContigsGreedy.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.3-bioc/meat/contiBAIT.buildbin-libdir/contiBAIT/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (contiBAIT)


>>>>>>> 
>>>>>>> FIXING LINKS FOR contiBAIT.buildbin-libdir/contiBAIT/libs//contiBAIT.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "contiBAIT.buildbin-libdir/contiBAIT/libs//contiBAIT.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "contiBAIT.buildbin-libdir/contiBAIT/libs//contiBAIT.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "contiBAIT.buildbin-libdir/contiBAIT/libs//contiBAIT.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "contiBAIT.buildbin-libdir/contiBAIT/libs//contiBAIT.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "contiBAIT.buildbin-libdir/contiBAIT/libs//contiBAIT.so"