BioC 3.3: CHECK report for gtrellis on morelia

Package: gtrellis

Version: 1.3.4

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings gtrellis_1.3.4.tar.gz

StartedAt: 2016-04-21 03:41:30 -0700 (Thu, 21 Apr 2016)

EndedAt: 2016-04-21 03:43:51 -0700 (Thu, 21 Apr 2016)

EllapsedTime: 141.3 seconds

RetCode: 0

Status:  OK

CheckDir: gtrellis.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings gtrellis_1.3.4.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.3-bioc/meat/gtrellis.Rcheck’
* using R version 3.3.0 beta (2016-04-06 r70435)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘gtrellis/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gtrellis’ version ‘1.3.4’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gtrellis’ can be installed ... [8s/9s] OK
* checking installed package size ... NOTE
  installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc   4.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [38s/39s] OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
add_heatmap_track 5.198  0.032   5.328
gtrellis_layout   4.973  0.012   5.039
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’ [6s/6s]
 [6s/7s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.3-bioc/meat/gtrellis.Rcheck/00check.log’
for details.

* installing *source* package ‘gtrellis’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (gtrellis)

name	user	system	elapsed
add_heatmap_track	5.198	0.032	5.328
add_ideogram_track	3.259	0.009	3.345
add_lines_track	3.923	0.022	3.991
add_points_track	2.530	0.025	2.695
add_rect_track	2.270	0.013	2.402
add_segments_track	2.239	0.007	2.273
add_track	3.754	0.026	3.810
current_track	0.000	0.001	0.001
get_cell_meta_data	3.774	0.014	3.886
gtrellis_layout	4.973	0.012	5.039
gtrellis_show_index	1.863	0.023	1.946