BioC 3.4: CHECK report for BrowserViz on zin1
This page was generated on 2016-09-21 03:39:40 -0700 (Wed, 21 Sep 2016).
BrowserViz 1.4.1 Paul Shannon
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016) | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BrowserViz | Last Changed Rev: 118258 / Revision: 121152 | Last Changed Date: 2016-06-07 10:47:30 -0700 (Tue, 07 Jun 2016) |
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | OK | OK | [ OK ] | |  |
moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | ...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED... |
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | ...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED... |
Summary
Package: BrowserViz |
Version: 1.4.1 |
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings BrowserViz_1.4.1.tar.gz |
StartedAt: 2016-09-20 03:55:52 -0700 (Tue, 20 Sep 2016) |
EndedAt: 2016-09-20 03:56:18 -0700 (Tue, 20 Sep 2016) |
EllapsedTime: 26.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: BrowserViz.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings BrowserViz_1.4.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.4-bioc/meat/BrowserViz.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BrowserViz/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BrowserViz’ version ‘1.4.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BrowserViz’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.setupWebSocketHandlers : <anonymous> : <anonymous>: no visible global
function definition for ‘is’
BrowserViz: no visible global function definition for ‘browseURL’
Undefined global functions or variables:
browseURL is
Consider adding
importFrom("methods", "is")
importFrom("utils", "browseURL")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.4-bioc/meat/BrowserViz.Rcheck/00check.log’
for details.
BrowserViz.Rcheck/00install.out:
* installing *source* package ‘BrowserViz’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BrowserViz)
BrowserViz.Rcheck/BrowserViz-Ex.timings:
name | user | system | elapsed
|
BrowserViz-class | 0.068 | 0.004 | 1.029 |
|