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BioC 3.4: BUILD BIN report for Mulcom on morelia

This page was generated on 2016-09-21 03:50:44 -0700 (Wed, 21 Sep 2016).

Package 790/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Mulcom 1.23.0
Claudio Isella
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Mulcom
Last Changed Rev: 117081 / Revision: 121152
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: Mulcom
Version: 1.23.0
Command: rm -rf Mulcom.buildbin-libdir && mkdir Mulcom.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Mulcom_1.23.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Mulcom.buildbin-libdir
StartedAt: 2016-09-20 15:14:56 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 15:15:02 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 5.3 seconds
RetCode: 0
Status:  OK 
PackageFile: Mulcom_1.23.0.tgz
PackageFileSize: 1.405 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf Mulcom.buildbin-libdir && mkdir Mulcom.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Mulcom_1.23.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Mulcom.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Mulcom.buildbin-libdir Mulcom_1.23.0.tar.gz'
>>>>>>> 

* installing *source* package ‘Mulcom’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c mulLibs.cc -o mulLibs.o
mulLibs.cc:708:17: warning: expression result unused [-Wunused-value]
                current_cluster ;
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
1 warning generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Mulcom.so mulLibs.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.4-bioc/meat/Mulcom.buildbin-libdir/Mulcom/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Mulcom)


>>>>>>> 
>>>>>>> FIXING LINKS FOR Mulcom.buildbin-libdir/Mulcom/libs//Mulcom.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "Mulcom.buildbin-libdir/Mulcom/libs//Mulcom.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "Mulcom.buildbin-libdir/Mulcom/libs//Mulcom.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "Mulcom.buildbin-libdir/Mulcom/libs//Mulcom.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "Mulcom.buildbin-libdir/Mulcom/libs//Mulcom.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "Mulcom.buildbin-libdir/Mulcom/libs//Mulcom.so"