Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M [N] O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.4: BUILD report for NetPathMiner on morelia

This page was generated on 2016-09-21 03:53:17 -0700 (Wed, 21 Sep 2016).

Package 814/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NetPathMiner 1.9.1
Ahmed Mohamed
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/NetPathMiner
Last Changed Rev: 121119 / Revision: 121152
Last Changed Date: 2016-09-19 01:48:17 -0700 (Mon, 19 Sep 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  ERROR  skipped 
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  ERROR  skipped  skipped 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: NetPathMiner
Version: 1.9.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data NetPathMiner
StartedAt: 2016-09-19 23:51:50 -0700 (Mon, 19 Sep 2016)
EndedAt: 2016-09-19 23:52:19 -0700 (Mon, 19 Sep 2016)
EllapsedTime: 29.1 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data NetPathMiner
###
##############################################################################
##############################################################################


* checking for file ‘NetPathMiner/DESCRIPTION’ ... OK
* preparing ‘NetPathMiner’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: igraph

Attaching package: ‘igraph’

The following objects are masked from ‘package:stats’:

    decompose, spectrum

The following object is masked from ‘package:base’:

    union

Extracting the 25 most probable paths for ALL1/AF4
Extracting the 25 most probable paths for BCR/ABL
Extracting the 25 most probable paths for E2A/PBX1
Extracting the 25 most probable paths for NEG

Error: processing vignette 'NPMVignette.Rnw' failed with diagnostics:
 chunk 37 
Error in eval(expr, envir, enclos) : could not find function ".to"
Execution halted