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BioC 3.4: BUILD report for RnBeads on morelia

This page was generated on 2016-09-21 03:54:26 -0700 (Wed, 21 Sep 2016).

Package 1038/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RnBeads 1.5.1
Fabian Mueller
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RnBeads
Last Changed Rev: 119550 / Revision: 121152
Last Changed Date: 2016-07-22 04:24:06 -0700 (Fri, 22 Jul 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: RnBeads
Version: 1.5.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RnBeads
StartedAt: 2016-09-20 01:11:35 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 01:13:04 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 89.9 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RnBeads
###
##############################################################################
##############################################################################


* checking for file ‘RnBeads/DESCRIPTION’ ... OK
* preparing ‘RnBeads’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Warning: replacing previous import ‘gridExtra::combine’ by ‘methylumi::combine’ when loading ‘RnBeads’
Loading required package: doParallel
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,  : 
  Running 'texi2dvi' on 'RnBeads.tex' failed.
LaTeX errors:
! Class scrartcl Error: undefined old font command `\it'.

See the scrartcl class documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Emergency stop.
 ...                                              
                                                  
l.1722 ...e reference-free method by Houseman {\it
                                                   et al}.˜\cite{Houseman201...
!  ==> Fatal error occurred, no output PDF file produced!
Calls: <Anonymous> -> texi2pdf -> texi2dvi
Execution halted