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BioC 3.4: INSTALL report for affy on moscato1

This page was generated on 2016-09-21 03:41:10 -0700 (Wed, 21 Sep 2016).

Package 16/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
affy 1.51.1
Rafael A. Irizarry
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/affy
Last Changed Rev: 120595 / Revision: 121152
Last Changed Date: 2016-08-30 14:18:04 -0700 (Tue, 30 Aug 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: affy
Version: 1.51.1
Command: rm -rf affy.buildbin-libdir && mkdir affy.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/affy_1.51.1.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=affy.buildbin-libdir --merge-multiarch affy_1.51.1.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL affy_1.51.1.zip && rm affy_1.51.1.tar.gz affy_1.51.1.zip
StartedAt: 2016-09-19 20:40:09 -0700 (Mon, 19 Sep 2016)
EndedAt: 2016-09-19 20:40:56 -0700 (Mon, 19 Sep 2016)
EllapsedTime: 47.3 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf affy.buildbin-libdir && mkdir affy.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/affy_1.51.1.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=affy.buildbin-libdir --merge-multiarch affy_1.51.1.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL affy_1.51.1.zip  && rm affy_1.51.1.tar.gz affy_1.51.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  284k  100  284k    0     0  18.7M      0 --:--:-- --:--:-- --:--:-- 27.7M

install for i386

* installing *source* package 'affy' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/bbs-3.4-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -DHAVE_ZLIB   -I"D:/biocbld/bbs-3.4-bioc/R/library/preprocessCore/include" -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c chipbackground.c -o chipbackground.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/bbs-3.4-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -DHAVE_ZLIB   -I"D:/biocbld/bbs-3.4-bioc/R/library/preprocessCore/include" -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c getall_locations.c -o getall_locations.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/bbs-3.4-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -DHAVE_ZLIB   -I"D:/biocbld/bbs-3.4-bioc/R/library/preprocessCore/include" -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c mas5calls.c -o mas5calls.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/bbs-3.4-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -DHAVE_ZLIB   -I"D:/biocbld/bbs-3.4-bioc/R/library/preprocessCore/include" -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c rma2.c -o rma2.o
C:/Rtools/mingw_32/bin/gcc  -I"D:/biocbld/bbs-3.4-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -DHAVE_ZLIB   -I"D:/biocbld/bbs-3.4-bioc/R/library/preprocessCore/include" -I"c:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c rma_common.c -o rma_common.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o affy.dll tmp.def chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -LD:/biocbld/bbs-3.4-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -Lc:/local323/lib/i386 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/affy.buildbin-libdir/affy/libs/i386
** R
** data
** demo
** inst
** preparing package for lazy loading
Creating a generic function for 'open' from package 'base' in package 'affy'
Creating a generic function for 'close' from package 'base' in package 'affy'
Creating a generic function for 'barplot' from package 'graphics' in package 'affy'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'affy' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/bbs-3.4-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -DHAVE_ZLIB   -I"D:/biocbld/bbs-3.4-bioc/R/library/preprocessCore/include" -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c chipbackground.c -o chipbackground.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/bbs-3.4-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -DHAVE_ZLIB   -I"D:/biocbld/bbs-3.4-bioc/R/library/preprocessCore/include" -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c getall_locations.c -o getall_locations.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/bbs-3.4-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -DHAVE_ZLIB   -I"D:/biocbld/bbs-3.4-bioc/R/library/preprocessCore/include" -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c mas5calls.c -o mas5calls.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/bbs-3.4-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -DHAVE_ZLIB   -I"D:/biocbld/bbs-3.4-bioc/R/library/preprocessCore/include" -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rma2.c -o rma2.o
C:/Rtools/mingw_64/bin/gcc  -I"D:/biocbld/bbs-3.4-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -DHAVE_ZLIB   -I"D:/biocbld/bbs-3.4-bioc/R/library/preprocessCore/include" -I"c:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rma_common.c -o rma_common.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o affy.dll tmp.def chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -LD:/biocbld/bbs-3.4-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -Lc:/local323/lib/x64 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/affy.buildbin-libdir/affy/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'affy' as affy_1.51.1.zip
* DONE (affy)
* installing to library 'D:/biocbld/bbs-3.4-bioc/R/library'
package 'affy' successfully unpacked and MD5 sums checked