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BioC 3.4: BUILD BIN report for geecc on morelia

This page was generated on 2016-09-21 03:53:38 -0700 (Wed, 21 Sep 2016).

Package 459/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geecc 1.7.7
Markus Boenn
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/geecc
Last Changed Rev: 121141 / Revision: 121152
Last Changed Date: 2016-09-19 08:18:29 -0700 (Mon, 19 Sep 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK YES, new version is higher than in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK  OK  OK YES, new version is higher than in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]YES, new version is higher than in internal repository

Summary

Package: geecc
Version: 1.7.7
Command: rm -rf geecc.buildbin-libdir && mkdir geecc.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh geecc_1.7.7.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R geecc.buildbin-libdir
StartedAt: 2016-09-20 14:58:02 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 14:58:15 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 13.0 seconds
RetCode: 0
Status:  OK 
PackageFile: geecc_1.7.7.tgz
PackageFileSize: 1.517 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf geecc.buildbin-libdir && mkdir geecc.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh geecc_1.7.7.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R geecc.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=geecc.buildbin-libdir geecc_1.7.7.tar.gz'
>>>>>>> 

* installing *source* package ‘geecc’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c rcpp_hello_world.cpp -o rcpp_hello_world.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c specialists.cpp -o specialists.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o geecc.so RcppExports.o rcpp_hello_world.o specialists.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.4-bioc/meat/geecc.buildbin-libdir/geecc/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (geecc)


>>>>>>> 
>>>>>>> FIXING LINKS FOR geecc.buildbin-libdir/geecc/libs//geecc.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "geecc.buildbin-libdir/geecc/libs//geecc.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "geecc.buildbin-libdir/geecc/libs//geecc.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "geecc.buildbin-libdir/geecc/libs//geecc.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "geecc.buildbin-libdir/geecc/libs//geecc.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "geecc.buildbin-libdir/geecc/libs//geecc.so"