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BioC 3.4: BUILD BIN report for normr on morelia

This page was generated on 2016-09-21 03:56:06 -0700 (Wed, 21 Sep 2016).

Package 825/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
normr 0.99.6
Johannes Helmuth
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/normr
Last Changed Rev: 119431 / Revision: 121152
Last Changed Date: 2016-07-18 07:38:22 -0700 (Mon, 18 Jul 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: normr
Version: 0.99.6
Command: rm -rf normr.buildbin-libdir && mkdir normr.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh normr_0.99.6.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R normr.buildbin-libdir
StartedAt: 2016-09-20 15:17:03 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 15:17:25 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 21.9 seconds
RetCode: 0
Status:  OK 
PackageFile: normr_0.99.6.tgz
PackageFileSize: 3.051 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf normr.buildbin-libdir && mkdir normr.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh normr_0.99.6.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R normr.buildbin-libdir
###
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##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=normr.buildbin-libdir normr_0.99.6.tar.gz'
>>>>>>> 

* installing *source* package ‘normr’ ...
** libs
clang++ -std=c++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -D_GLIBCXX_USE_C99 -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -std=c++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -D_GLIBCXX_USE_C99 -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2 -c em.cpp -o em.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -D_GLIBCXX_USE_C99 -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.3/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c normr_init.c -o normr_init.o
clang++ -std=c++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o normr.so RcppExports.o em.o normr_init.o -D_GLIBCXX_USE_C99 -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.4-bioc/meat/normr.buildbin-libdir/normr/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘normr’
Creating a new generic function for ‘getClasses’ in package ‘normr’
Creating a generic function for ‘print’ from package ‘base’ in package ‘normr’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (normr)


>>>>>>> 
>>>>>>> FIXING LINKS FOR normr.buildbin-libdir/normr/libs//normr.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "normr.buildbin-libdir/normr/libs//normr.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "normr.buildbin-libdir/normr/libs//normr.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "normr.buildbin-libdir/normr/libs//normr.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "normr.buildbin-libdir/normr/libs//normr.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "normr.buildbin-libdir/normr/libs//normr.so"