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BioC 3.4: BUILD BIN report for systemPipeR on moscato1

This page was generated on 2016-09-21 03:46:16 -0700 (Wed, 21 Sep 2016).

Package 1189/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
systemPipeR 1.7.3
Thomas Girke
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/systemPipeR
Last Changed Rev: 120039 / Revision: 121152
Last Changed Date: 2016-08-10 17:47:29 -0700 (Wed, 10 Aug 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: systemPipeR
Version: 1.7.3
Command: cd systemPipeR.buildbin-libdir/systemPipeR && zip -r ../../systemPipeR_1.7.3.zip . & cd ../..
StartedAt: 2016-09-20 19:37:00 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 19:37:12 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 12.8 seconds
RetCode: 0
Status:  OK  
PackageFile: systemPipeR_1.7.3.zip
PackageFileSize: 7.929 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd systemPipeR.buildbin-libdir/systemPipeR && zip -r ../../systemPipeR_1.7.3.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: DESCRIPTION (188 bytes security) (deflated 46%)
  adding: doc/ (208 bytes security) (stored 0%)
  adding: doc/index.html (188 bytes security) (deflated 80%)
  adding: doc/systemPipeChIPseq.pdf (188 bytes security) (deflated 11%)
  adding: doc/systemPipeChIPseq.R (188 bytes security) (deflated 73%)
  adding: doc/systemPipeChIPseq.Rnw (188 bytes security) (deflated 65%)
  adding: doc/systemPipeR.html (188 bytes security) (deflated 35%)
  adding: doc/systemPipeR.R (188 bytes security) (deflated 77%)
  adding: doc/systemPipeR.Rmd (188 bytes security) (deflated 71%)
  adding: doc/systemPipeRIBOseq.pdf (188 bytes security) (deflated 16%)
  adding: doc/systemPipeRIBOseq.R (188 bytes security) (deflated 76%)
  adding: doc/systemPipeRIBOseq.Rnw (188 bytes security) (deflated 67%)
  adding: doc/systemPipeRNAseq.pdf (188 bytes security) (deflated 14%)
  adding: doc/systemPipeRNAseq.R (188 bytes security) (deflated 70%)
  adding: doc/systemPipeRNAseq.Rnw (188 bytes security) (deflated 63%)
  adding: doc/systemPipeVARseq.pdf (188 bytes security) (deflated 5%)
  adding: doc/systemPipeVARseq.R (188 bytes security) (deflated 81%)
  adding: doc/systemPipeVARseq.Rnw (188 bytes security) (deflated 70%)
  adding: extdata/ (208 bytes security) (stored 0%)
  adding: extdata/.BatchJobs.R (188 bytes security) (deflated 19%)
  adding: extdata/alignStats.xls (188 bytes security) (deflated 62%)
  adding: extdata/annotate_peaks.param (188 bytes security) (deflated 44%)
  adding: extdata/annotate_vars.param (188 bytes security) (deflated 43%)
  adding: extdata/bowtiePE.param (188 bytes security) (deflated 42%)
  adding: extdata/bowtieSE.param (188 bytes security) (deflated 41%)
  adding: extdata/bwa.param (188 bytes security) (deflated 43%)
  adding: extdata/countDFeByg.xls (188 bytes security) (deflated 61%)
  adding: extdata/count_rangesets.param (188 bytes security) (deflated 44%)
  adding: extdata/custom_Fct.R (188 bytes security) (deflated 58%)
  adding: extdata/filter_gatk.param (188 bytes security) (deflated 43%)
  adding: extdata/filter_sambcf.param (188 bytes security) (deflated 43%)
  adding: extdata/filter_vartools.param (188 bytes security) (deflated 43%)
  adding: extdata/gatk.param (188 bytes security) (deflated 50%)
  adding: extdata/gatk_run.sh (188 bytes security) (deflated 61%)
  adding: extdata/gsnap.param (188 bytes security) (deflated 43%)
  adding: extdata/macs2.param (188 bytes security) (deflated 45%)
  adding: extdata/macs2_noinput.param (188 bytes security) (deflated 45%)
  adding: extdata/Makefile (188 bytes security) (deflated 62%)
  adding: extdata/rpkmDFeByg.xls (188 bytes security) (deflated 49%)
  adding: extdata/rsubread.param (188 bytes security) (deflated 43%)
  adding: extdata/rundiff.param (188 bytes security) (deflated 43%)
  adding: extdata/sambcf.param (188 bytes security) (deflated 49%)
  adding: extdata/sambcf_run.sh (188 bytes security) (deflated 54%)
  adding: extdata/slides/ (208 bytes security) (stored 0%)
  adding: extdata/slides/bibtex.bib (188 bytes security) (deflated 69%)
  adding: extdata/slides/images/ (208 bytes security) (stored 0%)
  adding: extdata/slides/images/SystemPipeR_Workflow.png (188 bytes security) (deflated 1%)
  adding: extdata/slides/logo.png (188 bytes security) (deflated 1%)
  adding: extdata/slides/systemPipeRslides.html (188 bytes security) (deflated 43%)
  adding: extdata/slides/systemPipeRslides.R (188 bytes security) (deflated 70%)
  adding: extdata/slides/systemPipeRslides.Rmd (188 bytes security) (deflated 64%)
  adding: extdata/slides/systemPipeRslides_cache/ (208 bytes security) (stored 0%)
  adding: extdata/slides/systemPipeRslides_cache/html/ (208 bytes security) (stored 0%)
  adding: extdata/targets.txt (188 bytes security) (deflated 65%)
  adding: extdata/targetsPE.txt (188 bytes security) (deflated 70%)
  adding: extdata/targetsPE_chip.txt (188 bytes security) (deflated 69%)
  adding: extdata/targets_chip.txt (188 bytes security) (deflated 64%)
  adding: extdata/tophat.param (188 bytes security) (deflated 42%)
  adding: extdata/torque.tmpl (188 bytes security) (deflated 49%)
  adding: extdata/trim.param (188 bytes security) (deflated 43%)
  adding: extdata/trimPE.param (188 bytes security) (deflated 49%)
  adding: extdata/vartools.param (188 bytes security) (deflated 43%)
  adding: extdata/vignette_archive/ (208 bytes security) (stored 0%)
  adding: extdata/vignette_archive/systemPipeR.pdf (188 bytes security) (deflated 8%)
  adding: extdata/vignette_archive/systemPipeR.R (188 bytes security) (deflated 74%)
  adding: extdata/vignette_archive/systemPipeR.Rnw (188 bytes security) (deflated 68%)
  adding: help/ (208 bytes security) (stored 0%)
  adding: help/aliases.rds (188 bytes security) (stored 0%)
  adding: help/AnIndex (188 bytes security) (deflated 78%)
  adding: help/paths.rds (188 bytes security) (stored 0%)
  adding: help/systemPipeR.rdb (188 bytes security) (deflated 0%)
  adding: help/systemPipeR.rdx (188 bytes security) (stored 0%)
  adding: html/ (208 bytes security) (stored 0%)
  adding: html/00Index.html (188 bytes security) (deflated 87%)
  adding: html/R.css (188 bytes security) (deflated 75%)
  adding: INDEX (188 bytes security) (deflated 60%)
  adding: MD5 (188 bytes security) (deflated 52%)
  adding: Meta/ (208 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
  adding: Meta/links.rds (188 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
  adding: Meta/package.rds (188 bytes security) (stored 0%)
  adding: Meta/Rd.rds (188 bytes security) (stored 0%)
  adding: Meta/vignette.rds (188 bytes security) (stored 0%)
  adding: NAMESPACE (188 bytes security) (deflated 50%)
  adding: NEWS (188 bytes security) (deflated 54%)
  adding: R/ (208 bytes security) (stored 0%)
  adding: R/systemPipeR (188 bytes security) (deflated 41%)
  adding: R/systemPipeR.rdb (188 bytes security) (deflated 19%)
  adding: R/systemPipeR.rdx (188 bytes security) (deflated 2%)
  adding: unitTests/ (208 bytes security) (stored 0%)
  adding: unitTests/SRR446027_1.fastq (188 bytes security) (stored 0%)
  adding: unitTests/SRR446028_1.fastq (188 bytes security) (stored 0%)
  adding: unitTests/SRR446029_1.fastq (188 bytes security) (stored 0%)
  adding: unitTests/SRR446030_1.fastq (188 bytes security) (stored 0%)
  adding: unitTests/targets.txt (188 bytes security) (deflated 39%)
  adding: unitTests/test_classes.R (188 bytes security) (deflated 32%)
  adding: unitTests/tophat.param (188 bytes security) (deflated 42%)