rcellminerData 1.5.2
Augustin Luna , Vinodh Rajapakse
| Snapshot Date: 2016-09-21 09:20:16 -0700 (Wed, 21 Sep 2016) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/rcellminerData | | Last Changed Rev: 3773 / Revision: 3889 | | Last Changed Date: 2016-05-15 13:21:08 -0700 (Sun, 15 May 2016) |
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | OK | OK | [ ERROR ] | OK | |
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### Running command:
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### rm -rf rcellminerData.buildbin-libdir rcellminerData.Rcheck && mkdir rcellminerData.buildbin-libdir rcellminerData.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=rcellminerData.buildbin-libdir rcellminerData_1.5.2.tar.gz >rcellminerData.Rcheck\00install.out 2>&1 && cp rcellminerData.Rcheck\00install.out rcellminerData-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=rcellminerData.buildbin-libdir --install="check:rcellminerData-install.out" --force-multiarch --no-vignettes --timings rcellminerData_1.5.2.tar.gz
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* using log directory 'D:/biocbld/bbs-3.4-data-experiment/meat/rcellminerData.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'rcellminerData/DESCRIPTION' ... OK
* this is package 'rcellminerData' version '1.5.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rcellminerData' can be installed ... OK
* checking installed package size ... NOTE
installed size is 161.4Mb
sub-directories of 1Mb or more:
data 39.2Mb
extdata 122.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... ERROR
Error : .onLoad failed in loadNamespace() for 'rcdk', details:
call: fun(libname, pkgname)
error:
=================
=================
This version of rCDK uses a CDK library that requires Java 1.8 or greater.
Please install Java 1.8 and let R know which Java to use by running the config tool:
sudo R CMD javareconf
Then you will need to re-install rJava.
# re install fromfrom R
# install.packages('rJava', type='source')
=================
=================
Failed with error: 'package 'rcdk' could not be loaded'
Error in .requirePackage(package) :
unable to find required package 'rcellminer'
Calls: <Anonymous> ... FUN -> <Anonymous> -> getClassDef -> .requirePackage
Execution halted
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
Error : .onLoad failed in loadNamespace() for 'rcdk', details:
call: fun(libname, pkgname)
error:
=================
=================
This version of rCDK uses a CDK library that requires Java 1.8 or greater.
Please install Java 1.8 and let R know which Java to use by running the config tool:
sudo R CMD javareconf
Then you will need to re-install rJava.
# re install fromfrom R
# install.packages('rJava', type='source')
=================
=================
Failed with error: 'package 'rcdk' could not be loaded'
Error in .requirePackage(package) :
unable to find required package 'rcellminer'
Calls: <Anonymous> ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
Execution halted
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
drugData.RData 20.6Mb 10.3Mb xz
molData.RData 18.7Mb 10.7Mb xz
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R'
OK
** running tests for arch 'x64' ...
Running 'runTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 2 NOTEs
See
'D:/biocbld/bbs-3.4-data-experiment/meat/rcellminerData.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'rcellminerData' ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'rcellminerData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rcellminerData' as rcellminerData_1.5.2.zip
* DONE (rcellminerData)