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BioC 3.4: BUILD BIN report for BufferedMatrix on morelia

This page was generated on 2017-04-15 16:22:25 -0400 (Sat, 15 Apr 2017).

Package 148/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BufferedMatrix 1.38.0
Benjamin Milo Bolstad
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/BufferedMatrix
Last Changed Rev: 122710 / Revision: 128728
Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: BufferedMatrix
Version: 1.38.0
Command: rm -rf BufferedMatrix.buildbin-libdir && mkdir BufferedMatrix.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BufferedMatrix_1.38.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BufferedMatrix.buildbin-libdir
StartedAt: 2017-04-15 09:43:19 -0700 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 09:43:34 -0700 (Sat, 15 Apr 2017)
EllapsedTime: 14.5 seconds
RetCode: 0
Status:  OK 
PackageFile: BufferedMatrix_1.38.0.tgz
PackageFileSize: 460.9 KiB

Command output

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###
### Running command:
###
###   rm -rf BufferedMatrix.buildbin-libdir && mkdir BufferedMatrix.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BufferedMatrix_1.38.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BufferedMatrix.buildbin-libdir
###
##############################################################################
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BufferedMatrix.buildbin-libdir BufferedMatrix_1.38.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BufferedMatrix’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c RBufferedMatrix.c -o RBufferedMatrix.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c doubleBufferedMatrix.c -o doubleBufferedMatrix.o
doubleBufferedMatrix.c:3327:12: warning: unused function 'sort_double' [-Wunused-function]
static int sort_double(const double *a1,const double *a2){
           ^
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c doubleBufferedMatrix_C_tests.c -o doubleBufferedMatrix_C_tests.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c init_package.c -o init_package.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BufferedMatrix.so RBufferedMatrix.o doubleBufferedMatrix.o doubleBufferedMatrix_C_tests.o init_package.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.4-bioc/meat/BufferedMatrix.buildbin-libdir/BufferedMatrix/libs
** R
** inst
** preparing package for lazy loading
Creating a new generic function for ‘rowMeans’ in package ‘BufferedMatrix’
Creating a new generic function for ‘rowSums’ in package ‘BufferedMatrix’
Creating a new generic function for ‘colMeans’ in package ‘BufferedMatrix’
Creating a new generic function for ‘colSums’ in package ‘BufferedMatrix’
Creating a generic function for ‘ncol’ from package ‘base’ in package ‘BufferedMatrix’
Creating a generic function for ‘nrow’ from package ‘base’ in package ‘BufferedMatrix’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BufferedMatrix)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BufferedMatrix.buildbin-libdir/BufferedMatrix/libs//BufferedMatrix.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs//BufferedMatrix.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs//BufferedMatrix.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs//BufferedMatrix.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs//BufferedMatrix.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs//BufferedMatrix.so"