BioC 3.4: CHECK report for CORREP on zin1
This page was generated on 2016-09-21 03:36:15 -0700 (Wed, 21 Sep 2016).
CORREP 1.39.0 Dongxiao Zhu
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016) | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CORREP | Last Changed Rev: 117081 / Revision: 121152 | Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016) |
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | NotNeeded | OK | [ OK ] | |  |
moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | NotNeeded | OK | OK | OK |  |
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK |  |
Summary
Package: CORREP |
Version: 1.39.0 |
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings CORREP_1.39.0.tar.gz |
StartedAt: 2016-09-20 05:05:56 -0700 (Tue, 20 Sep 2016) |
EndedAt: 2016-09-20 05:06:20 -0700 (Tue, 20 Sep 2016) |
EllapsedTime: 24.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CORREP.Rcheck |
Warnings: 0 |
Command output
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings CORREP_1.39.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.4-bioc/meat/CORREP.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CORREP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CORREP’ version ‘1.39.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CORREP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: CORREP-package.Rd:37-38: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
permutest 10.584 0.008 10.592
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.4-bioc/meat/CORREP.Rcheck/00check.log’
for details.
CORREP.Rcheck/00install.out:
* installing *source* package ‘CORREP’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CORREP)
CORREP.Rcheck/CORREP-Ex.timings:
name | user | system | elapsed
|
cor.LRtest | 0.016 | 0.004 | 0.021 |
|
cor.LRtest.std | 0.008 | 0.004 | 0.010 |
|
cor.balance | 0.080 | 0.000 | 0.078 |
|
cor.bootci | 0.924 | 0.000 | 0.924 |
|
cor.unbalance | 0.004 | 0.000 | 0.002 |
|
gal_all | 0.004 | 0.000 | 0.003 |
|
permutest | 10.584 | 0.008 | 10.592 |
|
true.member | 0.004 | 0.000 | 0.002 |
|