DynDoc 1.51.0
Bioconductor Package Maintainer
| Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DynDoc | | Last Changed Rev: 117081 / Revision: 121152 | | Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016) |
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | OK | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | OK | OK | [ OK ] | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf DynDoc.buildbin-libdir DynDoc.Rcheck && mkdir DynDoc.buildbin-libdir DynDoc.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DynDoc.buildbin-libdir DynDoc_1.51.0.tar.gz >DynDoc.Rcheck\00install.out 2>&1 && cp DynDoc.Rcheck\00install.out DynDoc-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=DynDoc.buildbin-libdir --install="check:DynDoc-install.out" --force-multiarch --no-vignettes --timings DynDoc_1.51.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/DynDoc.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DynDoc/DESCRIPTION' ... OK
* this is package 'DynDoc' version '1.51.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DynDoc' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'methods'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'methods' which was already attached by Depends.
Please remove these calls from your code.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'DynDoc/R/zzz.R':
.onLoad has wrong argument list 'pkgname, libname'
.onLoad calls:
require("methods")
Package startup functions should have two arguments with names starting
with 'lib' and 'pkg', respectively.
Package startup functions should not change the search path.
See section 'Good practice' in '?.onAttach'.
getVignette: no visible global function definition for 'Stangle'
getVignette: no visible global function definition for
'buildVersionNumber'
getVignette: no visible global function definition for
'installed.packages'
getVignette: no visible global function definition for
'package.description'
getVignetteCode: no visible global function definition for 'Stangle'
tangleToR: no visible binding for global variable 'RtangleWritedoc'
tangleToR: no visible binding for global variable 'RweaveLatexOptions'
Undefined global functions or variables:
RtangleWritedoc RweaveLatexOptions Stangle buildVersionNumber
installed.packages package.description
Consider adding
importFrom("utils", "RtangleWritedoc", "RweaveLatexOptions", "Stangle",
"installed.packages")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'D:/biocbld/bbs-3.4-bioc/meat/DynDoc.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'DynDoc' ...
** R
** preparing package for lazy loading
Creating a generic function for 'summary' from package 'base' in package 'DynDoc'
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
install for x64
* installing *source* package 'DynDoc' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DynDoc' as DynDoc_1.51.0.zip
* DONE (DynDoc)