BioC 3.4: CHECK report for LPE on tokay1
This page was generated on 2017-04-15 16:14:25 -0400 (Sat, 15 Apr 2017).
LPE 1.48.0
Nitin Jain
| Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/LPE | | Last Changed Rev: 122710 / Revision: 128728 | | Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
Summary
| Package: LPE
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| Version: 1.48.0
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| Command: rm -rf LPE.buildbin-libdir LPE.Rcheck && mkdir LPE.buildbin-libdir LPE.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=LPE.buildbin-libdir LPE_1.48.0.tar.gz >LPE.Rcheck\00install.out 2>&1 && cp LPE.Rcheck\00install.out LPE-install.out && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=LPE.buildbin-libdir --install="check:LPE-install.out" --force-multiarch --no-vignettes --timings LPE_1.48.0.tar.gz
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| StartedAt: 2017-04-14 23:15:48 -0400 (Fri, 14 Apr 2017)
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| EndedAt: 2017-04-14 23:16:26 -0400 (Fri, 14 Apr 2017)
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| EllapsedTime: 38.1 seconds
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| RetCode: 0
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| Status: OK
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| CheckDir: LPE.Rcheck
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| Warnings: 0
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Command output
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### Running command:
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### rm -rf LPE.buildbin-libdir LPE.Rcheck && mkdir LPE.buildbin-libdir LPE.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=LPE.buildbin-libdir LPE_1.48.0.tar.gz >LPE.Rcheck\00install.out 2>&1 && cp LPE.Rcheck\00install.out LPE-install.out && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=LPE.buildbin-libdir --install="check:LPE-install.out" --force-multiarch --no-vignettes --timings LPE_1.48.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.4-bioc/meat/LPE.Rcheck'
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'LPE/DESCRIPTION' ... OK
* this is package 'LPE' version '1.48.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'LPE' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
LPE.Rcheck/00install.out:
install for i386
* installing *source* package 'LPE' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'LPE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'LPE' as LPE_1.48.0.zip
* DONE (LPE)
LPE.Rcheck/examples_i386/LPE-Ex.timings:
| name | user | system | elapsed
|
| am.trans | 0 | 0 | 0 |
|
| baseOlig.error | 0.27 | 0.00 | 0.27 |
|
| baseOlig.error.step1 | 0.12 | 0.00 | 0.12 |
|
| baseOlig.error.step2 | 0.19 | 0.00 | 0.19 |
|
| fdr.adjust | 0.97 | 0.00 | 0.97 |
|
| fixbounds.predict.smooth.spline | 0.19 | 0.01 | 0.20 |
|
| iqr | 0 | 0 | 0 |
|
| lowess.normalize | 0.04 | 0.00 | 0.05 |
|
| lpe | 0.38 | 0.00 | 0.38 |
|
| mt.rawp2adjp | 0.30 | 0.00 | 0.29 |
|
| n.genes.adaptive.int | 0.11 | 0.00 | 0.11 |
|
| permute | 0 | 0 | 0 |
|
| preprocess | 0.09 | 0.00 | 0.10 |
|
| quan.norm | 0 | 0 | 0 |
|
| quartile.normalize | 0.05 | 0.00 | 0.04 |
|
| resamp.adj | 1.11 | 0.00 | 1.11 |
|
LPE.Rcheck/examples_x64/LPE-Ex.timings:
| name | user | system | elapsed
|
| am.trans | 0 | 0 | 0 |
|
| baseOlig.error | 0.39 | 0.00 | 0.39 |
|
| baseOlig.error.step1 | 0.16 | 0.00 | 0.16 |
|
| baseOlig.error.step2 | 0.17 | 0.01 | 0.19 |
|
| fdr.adjust | 1.16 | 0.00 | 1.15 |
|
| fixbounds.predict.smooth.spline | 0.20 | 0.02 | 0.22 |
|
| iqr | 0 | 0 | 0 |
|
| lowess.normalize | 0.04 | 0.00 | 0.04 |
|
| lpe | 0.44 | 0.00 | 0.44 |
|
| mt.rawp2adjp | 0.56 | 0.00 | 0.56 |
|
| n.genes.adaptive.int | 0.13 | 0.01 | 0.14 |
|
| permute | 0 | 0 | 0 |
|
| preprocess | 0.08 | 0.00 | 0.08 |
|
| quan.norm | 0 | 0 | 0 |
|
| quartile.normalize | 0.03 | 0.00 | 0.03 |
|
| resamp.adj | 1.40 | 0.00 | 1.39 |
|