Metab 1.7.0
Raphael Aggio
| Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Metab | | Last Changed Rev: 117081 / Revision: 121152 | | Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016) |
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf Metab.buildbin-libdir Metab.Rcheck && mkdir Metab.buildbin-libdir Metab.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Metab.buildbin-libdir Metab_1.7.0.tar.gz >Metab.Rcheck\00install.out 2>&1 && cp Metab.Rcheck\00install.out Metab-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=Metab.buildbin-libdir --install="check:Metab-install.out" --force-multiarch --no-vignettes --timings Metab_1.7.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/Metab.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Metab/DESCRIPTION' ... OK
* this is package 'Metab' version '1.7.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Metab' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
MetReport: no visible global function definition for 'read.csv'
MetReport: no visible global function definition for 'write.csv'
MetReportNames: no visible global function definition for 'read.csv'
MetReportNames: no visible global function definition for 'write.csv'
buildLib: no visible global function definition for 'read.csv'
buildLib: no visible global function definition for 'txtProgressBar'
buildLib: no visible global function definition for 'setTxtProgressBar'
buildLib: no visible global function definition for 'write.csv'
htest : test.t : <anonymous>: no visible global function definition for
't.test'
htest : anova.t : <anonymous>: no visible global function definition
for 'lm'
htest : anova.t: no visible binding for global variable 'anova'
htest: no visible global function definition for 'read.csv'
htest: no visible global function definition for 'p.adjust'
htest: no visible global function definition for 'write.csv'
normalizeByBiomass: no visible global function definition for
'read.csv'
normalizeByBiomass: no visible global function definition for
'write.csv'
normalizeByInternalStandard: no visible global function definition for
'read.csv'
normalizeByInternalStandard: no visible global function definition for
'select.list'
normalizeByInternalStandard: no visible global function definition for
'write.csv'
removeFalsePositives: no visible global function definition for
'read.csv'
removeFalsePositives: no visible global function definition for
'write.csv'
Undefined global functions or variables:
anova lm p.adjust read.csv select.list setTxtProgressBar t.test
txtProgressBar write.csv
Consider adding
importFrom("stats", "anova", "lm", "p.adjust", "t.test")
importFrom("utils", "read.csv", "select.list", "setTxtProgressBar",
"txtProgressBar", "write.csv")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'test-all.R'
OK
** running tests for arch 'x64' ...
Running 'test-all.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'D:/biocbld/bbs-3.4-bioc/meat/Metab.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'Metab' ...
** R
** data
** inst
** preparing package for lazy loading
Warning in fun(libname, pkgname) :
mzR has been built against a different Rcpp version (0.12.6)
than is installed on your system (0.12.7). This might lead to errors
when loading mzR. If you encounter such issues, please send a report,
including the output of sessionInfo() to the Bioc support forum at
https://support.bioconductor.org/. For details see also
https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue.
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning in fun(libname, pkgname) :
mzR has been built against a different Rcpp version (0.12.6)
than is installed on your system (0.12.7). This might lead to errors
when loading mzR. If you encounter such issues, please send a report,
including the output of sessionInfo() to the Bioc support forum at
https://support.bioconductor.org/. For details see also
https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue.
install for x64
* installing *source* package 'Metab' ...
** testing if installed package can be loaded
Warning in fun(libname, pkgname) :
mzR has been built against a different Rcpp version (0.12.6)
than is installed on your system (0.12.7). This might lead to errors
when loading mzR. If you encounter such issues, please send a report,
including the output of sessionInfo() to the Bioc support forum at
https://support.bioconductor.org/. For details see also
https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue.
* MD5 sums
packaged installation of 'Metab' as Metab_1.7.0.zip
* DONE (Metab)