BioC 3.4: CHECK report for MultiAssayExperiment on morelia
This page was generated on 2017-04-15 16:27:37 -0400 (Sat, 15 Apr 2017).
MultiAssayExperiment 1.0.1 Marcel Ramos
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/MultiAssayExperiment | Last Changed Rev: 126861 / Revision: 128728 | Last Changed Date: 2017-02-21 15:02:51 -0500 (Tue, 21 Feb 2017) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK |  |
morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | [ OK ] | OK |  |
Summary
Package: MultiAssayExperiment |
Version: 1.0.1 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings MultiAssayExperiment_1.0.1.tar.gz |
StartedAt: 2017-04-15 05:27:45 -0700 (Sat, 15 Apr 2017) |
EndedAt: 2017-04-15 05:30:13 -0700 (Sat, 15 Apr 2017) |
EllapsedTime: 148.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MultiAssayExperiment.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings MultiAssayExperiment_1.0.1.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.4-bioc/meat/MultiAssayExperiment.Rcheck’
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MultiAssayExperiment/DESCRIPTION’ ... OK
* this is package ‘MultiAssayExperiment’ version ‘1.0.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MultiAssayExperiment’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
MultiAssayExperiment.Rcheck/00install.out:
* installing *source* package ‘MultiAssayExperiment’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MultiAssayExperiment)
MultiAssayExperiment.Rcheck/MultiAssayExperiment-Ex.timings:
name | user | system | elapsed
|
API | 0.001 | 0.000 | 0.001 |
|
ExperimentList-class | 0.022 | 0.003 | 0.025 |
|
ExperimentList | 0.126 | 0.002 | 0.127 |
|
MultiAssayExperiment-class | 0.159 | 0.004 | 0.164 |
|
MultiAssayExperiment | 0.754 | 0.018 | 0.943 |
|
PrepMultiAssay | 0.973 | 0.029 | 1.003 |
|
RangedRaggedAssay | 0.142 | 0.004 | 0.146 |
|
assay-RangedRaggedAssay-ANY-method | 0.390 | 0.006 | 0.396 |
|
experiments-set | 0.474 | 0.008 | 0.482 |
|
experiments | 0.426 | 0.006 | 0.433 |
|
getHits | 1.101 | 0.014 | 1.172 |
|
hasAssay | 0.006 | 0.000 | 0.006 |
|
mapToList | 0.074 | 0.001 | 0.074 |
|
sampleMap-set | 0.468 | 0.008 | 0.476 |
|
sampleMap | 0.029 | 0.001 | 0.030 |
|
subsetByAssay | 0.659 | 0.011 | 0.670 |
|
subsetByColumn | 0.978 | 0.009 | 0.990 |
|
subsetByRow | 1.034 | 0.008 | 1.045 |
|