BioC 3.4: CHECK report for MultiDataSet on tokay1
This page was generated on 2017-04-15 16:21:05 -0400 (Sat, 15 Apr 2017).
MultiDataSet 1.2.0
Carlos Ruiz-Arenas
| Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/MultiDataSet | | Last Changed Rev: 122710 / Revision: 128728 | | Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
Summary
| Package: MultiDataSet
|
| Version: 1.2.0
|
| Command: rm -rf MultiDataSet.buildbin-libdir MultiDataSet.Rcheck && mkdir MultiDataSet.buildbin-libdir MultiDataSet.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MultiDataSet.buildbin-libdir MultiDataSet_1.2.0.tar.gz >MultiDataSet.Rcheck\00install.out 2>&1 && cp MultiDataSet.Rcheck\00install.out MultiDataSet-install.out && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=MultiDataSet.buildbin-libdir --install="check:MultiDataSet-install.out" --force-multiarch --no-vignettes --timings MultiDataSet_1.2.0.tar.gz
|
| StartedAt: 2017-04-14 23:43:58 -0400 (Fri, 14 Apr 2017)
|
| EndedAt: 2017-04-14 23:50:53 -0400 (Fri, 14 Apr 2017)
|
| EllapsedTime: 415.3 seconds
|
| RetCode: 0
|
| Status: OK
|
| CheckDir: MultiDataSet.Rcheck
|
| Warnings: 0
|
Command output
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf MultiDataSet.buildbin-libdir MultiDataSet.Rcheck && mkdir MultiDataSet.buildbin-libdir MultiDataSet.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MultiDataSet.buildbin-libdir MultiDataSet_1.2.0.tar.gz >MultiDataSet.Rcheck\00install.out 2>&1 && cp MultiDataSet.Rcheck\00install.out MultiDataSet-install.out && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=MultiDataSet.buildbin-libdir --install="check:MultiDataSet-install.out" --force-multiarch --no-vignettes --timings MultiDataSet_1.2.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.4-bioc/meat/MultiDataSet.Rcheck'
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MultiDataSet/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MultiDataSet' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MultiDataSet' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
add_methy 10.4 1.23 15.59
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
add_methy 13.8 0.83 14.62
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
MultiDataSet.Rcheck/00install.out:
install for i386
* installing *source* package 'MultiDataSet' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'MultiDataSet' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MultiDataSet' as MultiDataSet_1.2.0.zip
* DONE (MultiDataSet)
MultiDataSet.Rcheck/examples_i386/MultiDataSet-Ex.timings:
| name | user | system | elapsed
|
| MethylationSet-class | 0 | 0 | 0 |
|
| MultiDataSet-class | 0 | 0 | 0 |
|
| add_eset | 0.09 | 0.00 | 0.09 |
|
| add_genexp | 0.08 | 0.00 | 0.08 |
|
| add_methy | 10.40 | 1.23 | 15.59 |
|
| add_rnaseq-methods | 0.05 | 0.00 | 0.05 |
|
| add_rse | 0.16 | 0.03 | 0.18 |
|
| add_snps | 0.06 | 0.00 | 0.07 |
|
| checkProbes-methods | 1.66 | 0.08 | 1.73 |
|
| checkSamples-methods | 1.73 | 0.00 | 1.73 |
|
| chrNumToChar | 0 | 0 | 0 |
|
| commonIds | 0.09 | 0.00 | 0.09 |
|
| commonSamples | 0.17 | 0.03 | 0.21 |
|
| getMs-methods | 2.54 | 0.19 | 2.74 |
|
| prepareMethylationSet | 1.53 | 0.09 | 1.63 |
|
| rowRangesElements | 0.10 | 0.00 | 0.09 |
|
MultiDataSet.Rcheck/examples_x64/MultiDataSet-Ex.timings:
| name | user | system | elapsed
|
| MethylationSet-class | 0 | 0 | 0 |
|
| MultiDataSet-class | 0 | 0 | 0 |
|
| add_eset | 0.13 | 0.00 | 0.12 |
|
| add_genexp | 0.15 | 0.00 | 0.16 |
|
| add_methy | 13.80 | 0.83 | 14.62 |
|
| add_rnaseq-methods | 0.08 | 0.00 | 0.08 |
|
| add_rse | 0.27 | 0.02 | 0.28 |
|
| add_snps | 0.08 | 0.00 | 0.07 |
|
| checkProbes-methods | 3.90 | 0.05 | 3.96 |
|
| checkSamples-methods | 2.74 | 0.01 | 2.75 |
|
| chrNumToChar | 0 | 0 | 0 |
|
| commonIds | 0.12 | 0.00 | 0.14 |
|
| commonSamples | 0.19 | 0.00 | 0.19 |
|
| getMs-methods | 2.93 | 0.13 | 3.06 |
|
| prepareMethylationSet | 2.11 | 0.04 | 2.15 |
|
| rowRangesElements | 0.13 | 0.00 | 0.13 |
|