affyQCReport 1.51.0
Craig Parman
| Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/affyQCReport | | Last Changed Rev: 117081 / Revision: 121152 | | Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016) |
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | OK | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | OK | OK | [ OK ] | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf affyQCReport.buildbin-libdir affyQCReport.Rcheck && mkdir affyQCReport.buildbin-libdir affyQCReport.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=affyQCReport.buildbin-libdir affyQCReport_1.51.0.tar.gz >affyQCReport.Rcheck\00install.out 2>&1 && cp affyQCReport.Rcheck\00install.out affyQCReport-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=affyQCReport.buildbin-libdir --install="check:affyQCReport-install.out" --force-multiarch --no-vignettes --timings affyQCReport_1.51.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/affyQCReport.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'affyQCReport/DESCRIPTION' ... OK
* this is package 'affyQCReport' version '1.51.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'affyQCReport' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
'affy' 'Biobase' 'lattice'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
borderQC1: warning in axis(1, label = ArrayIndex, at = seq(1 - 0.5,
length(ArrayIndex) - 0.5), cex = 0.2): partial argument match of
'label' to 'labels'
borderQC2: warning in axis(1, label = ArrayIndex, at = seq(1 - 0.5,
length(ArrayIndex) - 0.5), cex = 0.2): partial argument match of
'label' to 'labels'
correlationPlot: warning in axis(2, label = as.list(pretty(c, 10)), at
= seq(0, 1, by = (1/(length(pretty(c, 10)) - 1)))): partial argument
match of 'label' to 'labels'
correlationPlot: warning in axis(4, label =
as.list(attr(object@phenoData, which = "varLabels")[1:phenodepth]),
at = seq(1 - 0.5, phenodepth - 0.5), las = 1): partial argument match
of 'label' to 'labels'
signalDist: warning in legend(((temppar$xaxp[2] -
temppar$xaxp[1])/temppar$xaxp[3]) * (temppar$xaxp[3] - 1) +
temppar$xaxp[1], temppar$yaxp[2], as.character(ArrayIndex), lt =
1:length(ArrayIndex), col = 1:length(ArrayIndex), cex = 0.5): partial
argument match of 'lt' to 'lty'
affyQAReport: no visible global function definition for 'shortPathName'
Undefined global functions or variables:
shortPathName
Consider adding
importFrom("utils", "shortPathName")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'D:/biocbld/bbs-3.4-bioc/meat/affyQCReport.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'affyQCReport' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'affyQCReport' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'affyQCReport' as affyQCReport_1.51.0.zip
* DONE (affyQCReport)