BioC 3.4: CHECK report for crossmeta on zin1

Package: crossmeta

Version: 0.99.12

Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings crossmeta_0.99.12.tar.gz

StartedAt: 2016-09-20 05:10:46 -0700 (Tue, 20 Sep 2016)

EndedAt: 2016-09-20 05:12:41 -0700 (Tue, 20 Sep 2016)

EllapsedTime: 114.6 seconds

RetCode: 0

Status:  OK

CheckDir: crossmeta.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings crossmeta_0.99.12.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.4-bioc/meat/crossmeta.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘crossmeta/DESCRIPTION’ ... OK
* this is package ‘crossmeta’ version ‘0.99.12’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘crossmeta’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
setup_prev 41.296  0.080  41.386
diff_expr  28.108  0.096  28.217
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘crossmeta’ ...
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (crossmeta)

name	user	system	elapsed
contribute	0.700	0.008	0.709
diff_expr	28.108	0.096	28.217
es_meta	1.896	0.020	1.917
get_raw	0.056	0.028	3.778
load_diff	0.144	0.000	0.145
load_raw	0.192	0.016	0.210
open_raw_illum	0.008	0.000	0.007
setup_prev	41.296	0.080	41.386
symbol_annot	1.796	0.012	1.806