BioC 3.4: BUILD BIN report for inveRsion on morelia

Package: inveRsion

Version: 1.22.0

Command: rm -rf inveRsion.buildbin-libdir && mkdir inveRsion.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh inveRsion_1.22.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R inveRsion.buildbin-libdir

StartedAt: 2017-04-15 10:23:34 -0700 (Sat, 15 Apr 2017)

EndedAt: 2017-04-15 10:24:01 -0700 (Sat, 15 Apr 2017)

EllapsedTime: 26.9 seconds

RetCode: 0

Status:  OK

PackageFile: inveRsion_1.22.0.tgz

PackageFileSize: 527.7 KiB

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### Running command:
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###   rm -rf inveRsion.buildbin-libdir && mkdir inveRsion.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh inveRsion_1.22.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R inveRsion.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=inveRsion.buildbin-libdir inveRsion_1.22.0.tar.gz'
>>>>>>> 

* installing *source* package ‘inveRsion’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c init_inveRsion.c -o init_inveRsion.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c inversionModel.c -o inversionModel.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c writeGenoDat.c -o writeGenoDat.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o inveRsion.so init_inveRsion.o inversionModel.o writeGenoDat.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.4-bioc/meat/inveRsion.buildbin-libdir/inveRsion/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (inveRsion)


>>>>>>> 
>>>>>>> FIXING LINKS FOR inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so"