ncdfFlow 2.19.6
Mike Jiang
| Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ncdfFlow | | Last Changed Rev: 120793 / Revision: 121152 | | Last Changed Date: 2016-09-07 16:14:39 -0700 (Wed, 07 Sep 2016) |
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | [ OK ] | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | OK | OK | OK | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD INSTALL ncdfFlow
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* installing to library ‘/home/biocbuild/bbs-3.4-bioc/R/library’
* installing *source* package ‘ncdfFlow’ ...
configure: No directory was specified for --with-hdf5. Trying to find hdf5 using pkg-config.
checking for pkg-config... /usr/bin/pkg-config
checking for h5cc... /usr/bin/h5cc
configure: PKG_CPPFLAGS = -I/usr/include/hdf5/serial
configure: PKG_LIBS = -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -I"/home/biocbuild/bbs-3.4-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.4-bioc/R/library/RcppArmadillo/include" -I"/home/biocbuild/bbs-3.4-bioc/R/library/BH/include" -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -I"/home/biocbuild/bbs-3.4-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.4-bioc/R/library/RcppArmadillo/include" -I"/home/biocbuild/bbs-3.4-bioc/R/library/BH/include" -fpic -g -O2 -Wall -c bitOps.cpp -o bitOps.o
bitOps.cpp: In function ‘Rcpp::LogicalVector toLogical(Rcpp::RawVector)’:
bitOps.cpp:23:11: warning: unused variable ‘nByte’ [-Wunused-variable]
unsigned nByte = bytes.size();
^
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -I"/home/biocbuild/bbs-3.4-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.4-bioc/R/library/RcppArmadillo/include" -I"/home/biocbuild/bbs-3.4-bioc/R/library/BH/include" -fpic -g -O2 -Wall -c hdfFlow.c -o hdfFlow.o
gcc -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -I"/home/biocbuild/bbs-3.4-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.4-bioc/R/library/RcppArmadillo/include" -I"/home/biocbuild/bbs-3.4-bioc/R/library/BH/include" -fpic -g -O2 -Wall -c init.c -o init.o
g++ -I/home/biocbuild/bbs-3.4-bioc/R/include -DNDEBUG -I/usr/include/hdf5/serial -I/usr/local/include -I"/home/biocbuild/bbs-3.4-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.4-bioc/R/library/RcppArmadillo/include" -I"/home/biocbuild/bbs-3.4-bioc/R/library/BH/include" -fpic -g -O2 -Wall -c readFrame.cpp -o readFrame.o
readFrame.cpp: In function ‘Rcpp::NumericVector readSlice_cpp(std::__cxx11::string, std::vector<unsigned int, std::allocator<unsigned int> >, unsigned int, unsigned int&)’:
readFrame.cpp:140:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(i = 0; i < chCount; i++){
^
readFrame.cpp:237:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(i = 0; i < chCount; i++){
^
g++ -shared -L/home/biocbuild/bbs-3.4-bioc/R/lib -L/usr/local/lib -o ncdfFlow.so RcppExports.o bitOps.o hdfFlow.o init.o readFrame.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -L/home/biocbuild/bbs-3.4-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.4-bioc/R/library/ncdfFlow/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ncdfFlow)