rnaSeqMap 2.31.0
Michal Okoniewski
| Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rnaSeqMap | | Last Changed Rev: 117081 / Revision: 121152 | | Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016) |
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | OK | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | [ OK ] | OK | OK | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | ERROR | skipped | skipped | |
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### Running command:
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### rm -rf rnaSeqMap.buildbin-libdir && mkdir rnaSeqMap.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.4/bioc/src/contrib/rnaSeqMap_2.31.0.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --library=rnaSeqMap.buildbin-libdir --merge-multiarch rnaSeqMap_2.31.0.tar.gz && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL rnaSeqMap_2.31.0.zip && rm rnaSeqMap_2.31.0.tar.gz rnaSeqMap_2.31.0.zip
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install for i386
* installing *source* package 'rnaSeqMap' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c Rinit.c -o Rinit.o
C:/Rtools/mingw_32/bin/gcc -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c gcoverage.c -o gcoverage.o
gcoverage.c: In function 'gcoverage':
gcoverage.c:7:31: warning: variable 'nc' set but not used [-Wunused-but-set-variable]
int start, i, j, na, nb, nc, nwyn;
^
C:/Rtools/mingw_32/bin/gcc -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ghistogram.c -o ghistogram.o
ghistogram.c: In function 'ghistogram':
ghistogram.c:9:10: warning: variable 'xa' set but not used [-Wunused-but-set-variable]
int *xa, *xb, *xab;
^
ghistogram.c:8:20: warning: variable 'nb' set but not used [-Wunused-but-set-variable]
int i, j, l , na, nb, nab, Is;
^
C:/Rtools/mingw_32/bin/gcc -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c regionmining.c -o regionmining.o
regionmining.c: In function 'regionmining':
regionmining.c:22:18: warning: variable 'start' set but not used [-Wunused-but-set-variable]
int current, start, param, minsup,*xwyn;
^
C:/Rtools/mingw_32/bin/gcc -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c splicingind.c -o splicingind.o
splicingind.c: In function 'splicingind':
splicingind.c:8:13: warning: variable 'nb' set but not used [-Wunused-but-set-variable]
int j, na, nb, nab;
^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o rnaSeqMap.dll tmp.def Rinit.o gcoverage.o ghistogram.o regionmining.o splicingind.o -Lc:/local323/lib/i386 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'rnaSeqMap' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c Rinit.c -o Rinit.o
C:/Rtools/mingw_64/bin/gcc -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c gcoverage.c -o gcoverage.o
gcoverage.c: In function 'gcoverage':
gcoverage.c:7:31: warning: variable 'nc' set but not used [-Wunused-but-set-variable]
int start, i, j, na, nb, nc, nwyn;
^
C:/Rtools/mingw_64/bin/gcc -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ghistogram.c -o ghistogram.o
ghistogram.c: In function 'ghistogram':
ghistogram.c:9:10: warning: variable 'xa' set but not used [-Wunused-but-set-variable]
int *xa, *xb, *xab;
^
ghistogram.c:8:20: warning: variable 'nb' set but not used [-Wunused-but-set-variable]
int i, j, l , na, nb, nab, Is;
^
C:/Rtools/mingw_64/bin/gcc -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c regionmining.c -o regionmining.o
regionmining.c: In function 'regionmining':
regionmining.c:22:18: warning: variable 'start' set but not used [-Wunused-but-set-variable]
int current, start, param, minsup,*xwyn;
^
C:/Rtools/mingw_64/bin/gcc -I"D:/biocbld/BBS-3˜1.4-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c splicingind.c -o splicingind.o
splicingind.c: In function 'splicingind':
splicingind.c:8:13: warning: variable 'nb' set but not used [-Wunused-but-set-variable]
int j, na, nb, nab;
^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o rnaSeqMap.dll tmp.def Rinit.o gcoverage.o ghistogram.o regionmining.o splicingind.o -Lc:/local323/lib/x64 -Lc:/local323/lib -LD:/biocbld/BBS-3˜1.4-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.4-bioc/meat/rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rnaSeqMap' as rnaSeqMap_2.31.0.zip
* DONE (rnaSeqMap)
* installing to library 'D:/biocbld/bbs-3.4-bioc/R/library'
package 'rnaSeqMap' successfully unpacked and MD5 sums checked