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BioC 3.4: BUILD report for saps on morelia

This page was generated on 2017-04-15 16:26:06 -0400 (Sat, 15 Apr 2017).

Package 1109/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
saps 2.8.0
Daniel Schmolze
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/saps
Last Changed Rev: 122710 / Revision: 128728
Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  ERROR  skipped  skipped 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: saps
Version: 2.8.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data saps
StartedAt: 2017-04-14 19:29:02 -0700 (Fri, 14 Apr 2017)
EndedAt: 2017-04-14 19:29:13 -0700 (Fri, 14 Apr 2017)
EllapsedTime: 10.8 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data saps
###
##############################################################################
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* checking for file ‘saps/DESCRIPTION’ ... OK
* preparing ‘saps’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: survival
Calculating concordance index...done.
Using gene set set1, size = 5
gene set #1 of 2
Calculating P_pure...done.
Calculating P_random...done.
Calculating P_enrichment...Quitting from lines 76-77 (saps.Rmd) 
Error: processing vignette 'saps.Rmd' failed with diagnostics:
incorrect number of dimensions
Execution halted