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BioC 3.4: BUILD report for BSgenome on zin1

This page was generated on 2016-09-21 03:36:04 -0700 (Wed, 21 Sep 2016).

Package 140/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BSgenome 1.41.2
H. Pagès
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BSgenome
Last Changed Rev: 120988 / Revision: 121152
Last Changed Date: 2016-09-15 15:14:12 -0700 (Thu, 15 Sep 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  OK [ OK ] WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: BSgenome
Version: 1.41.2
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenome
StartedAt: 2016-09-19 20:51:49 -0700 (Mon, 19 Sep 2016)
EndedAt: 2016-09-19 20:53:16 -0700 (Mon, 19 Sep 2016)
EllapsedTime: 86.6 seconds
RetCode: 0
Status:  OK 
PackageFile: BSgenome_1.41.2.tar.gz
PackageFileSize: 5.808 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenome
###
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* checking for file ‘BSgenome/DESCRIPTION’ ... OK
* preparing ‘BSgenome’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory ‘BSgenome/inst/pkgtemplates/BSgenome_datapkg/inst/extdata’ is empty
WARNING: directory ‘BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/inst/extdata’ is empty
WARNING: directory ‘BSgenome/tests’ is empty
* building ‘BSgenome_1.41.2.tar.gz’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘BSgenome/inst/extdata/GentlemanLab/1000genomes/BSgenome.Hsapiens.1000g.b36female-tools/split_human_b36_female.sh’