BioC 3.4: CHECK report for DOSE on tokay1

Package: DOSE

Version: 3.0.10

Command: rm -rf DOSE.buildbin-libdir DOSE.Rcheck && mkdir DOSE.buildbin-libdir DOSE.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DOSE.buildbin-libdir DOSE_3.0.10.tar.gz >DOSE.Rcheck\00install.out 2>&1 && cp DOSE.Rcheck\00install.out DOSE-install.out && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=DOSE.buildbin-libdir --install="check:DOSE-install.out" --force-multiarch --no-vignettes --timings DOSE_3.0.10.tar.gz

StartedAt: 2017-04-14 22:00:52 -0400 (Fri, 14 Apr 2017)

EndedAt: 2017-04-14 22:03:30 -0400 (Fri, 14 Apr 2017)

EllapsedTime: 157.9 seconds

RetCode: 0

Status:  OK

CheckDir: DOSE.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf DOSE.buildbin-libdir DOSE.Rcheck && mkdir DOSE.buildbin-libdir DOSE.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DOSE.buildbin-libdir DOSE_3.0.10.tar.gz >DOSE.Rcheck\00install.out 2>&1 && cp DOSE.Rcheck\00install.out DOSE-install.out  && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=DOSE.buildbin-libdir --install="check:DOSE-install.out" --force-multiarch --no-vignettes --timings DOSE_3.0.10.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.4-bioc/meat/DOSE.Rcheck'
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DOSE/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DOSE' version '3.0.10'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DOSE' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.7Mb
  sub-directories of 1Mb or more:
    data   3.0Mb
    doc    2.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.4-bioc/meat/DOSE.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'DOSE' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'DOSE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DOSE' as DOSE_3.0.10.zip
* DONE (DOSE)

name	user	system	elapsed
clusterSim	1.10	0.02	1.11
enrichDO	1.51	0.04	2.02
geneID	0.88	0.02	0.89
geneInCategory	0.84	0.01	0.86
mclusterSim	0.96	0.00	0.95
upsetplot-methods	0	0	0

name	user	system	elapsed
clusterSim	1.00	0.01	1.02
enrichDO	1.39	0.08	1.46
geneID	0.78	0.03	0.83
geneInCategory	0.99	0.02	1.00
mclusterSim	0.58	0.00	0.58
upsetplot-methods	0	0	0