Icens 1.45.0
Bioconductor Package Maintainer
| Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Icens | | Last Changed Rev: 117081 / Revision: 121152 | | Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016) |
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | OK | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | OK | OK | [ OK ] | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf Icens.buildbin-libdir Icens.Rcheck && mkdir Icens.buildbin-libdir Icens.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Icens.buildbin-libdir Icens_1.45.0.tar.gz >Icens.Rcheck\00install.out 2>&1 && cp Icens.Rcheck\00install.out Icens-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=Icens.buildbin-libdir --install="check:Icens-install.out" --force-multiarch --no-vignettes --timings Icens_1.45.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/Icens.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Icens/DESCRIPTION' ... OK
* this is package 'Icens' version '1.45.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Icens' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'survival'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
VEMICMmac: no visible binding for global variable 'EMstep'
Undefined global functions or variables:
EMstep
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
ISDM 6.24 0.02 6.25
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
ISDM 7.61 0 7.61
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testbv.R'
Comparing 'testbv.Rout' to 'testbv.Rout.save' ...117c117
< [6] 1.461001e+00 1.207129e+00 1.000000e+00 4.748624e-01 4.639536e-17
---
> [6] 1.461001e+00 1.207129e+00 1.000000e+00 4.748624e-01 -2.480201e-16
Warning message:
running command '"diff" -bw "D:\biocbld\bbs-3.4-bioc\tmpdir\Rtmp0SeNMe\Rdiffa209412f14dd3" "D:\biocbld\bbs-3.4-bioc\tmpdir\Rtmp0SeNMe\Rdiffb20946862107"' had status 1
OK
** running tests for arch 'x64' ...
Running 'testbv.R'
Comparing 'testbv.Rout' to 'testbv.Rout.save' ...117c117
< [6] 1.461001e+00 1.207129e+00 1.000000e+00 4.748624e-01 -2.640501e-16
---
> [6] 1.461001e+00 1.207129e+00 1.000000e+00 4.748624e-01 -2.480201e-16
Warning message:
running command '"diff" -bw "D:\biocbld\bbs-3.4-bioc\tmpdir\Rtmpsv6dNO\Rdiffa2e8700338cf" "D:\biocbld\bbs-3.4-bioc\tmpdir\Rtmpsv6dNO\Rdiffb2e8121aaa"' had status 1
OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'D:/biocbld/bbs-3.4-bioc/meat/Icens.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'Icens' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
install for x64
* installing *source* package 'Icens' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Icens' as Icens_1.45.0.zip
* DONE (Icens)