BioC 3.4: BUILD BIN report for InteractionSet on morelia

Package: InteractionSet

Version: 1.2.1

Command: rm -rf InteractionSet.buildbin-libdir && mkdir InteractionSet.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh InteractionSet_1.2.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R InteractionSet.buildbin-libdir

StartedAt: 2017-04-15 10:23:20 -0700 (Sat, 15 Apr 2017)

EndedAt: 2017-04-15 10:23:44 -0700 (Sat, 15 Apr 2017)

EllapsedTime: 23.3 seconds

RetCode: 0

Status:  OK

PackageFile: InteractionSet_1.2.1.tgz

PackageFileSize: 761.7 KiB

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf InteractionSet.buildbin-libdir && mkdir InteractionSet.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh InteractionSet_1.2.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R InteractionSet.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=InteractionSet.buildbin-libdir InteractionSet_1.2.1.tar.gz'
>>>>>>> 

* installing *source* package ‘InteractionSet’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c box_bounds.cpp -o box_bounds.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c init.cpp -o init.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c overlaps.cpp -o overlaps.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o InteractionSet.so box_bounds.o init.o overlaps.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.4-bioc/meat/InteractionSet.buildbin-libdir/InteractionSet/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (InteractionSet)


>>>>>>> 
>>>>>>> FIXING LINKS FOR InteractionSet.buildbin-libdir/InteractionSet/libs//InteractionSet.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "InteractionSet.buildbin-libdir/InteractionSet/libs//InteractionSet.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "InteractionSet.buildbin-libdir/InteractionSet/libs//InteractionSet.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "InteractionSet.buildbin-libdir/InteractionSet/libs//InteractionSet.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "InteractionSet.buildbin-libdir/InteractionSet/libs//InteractionSet.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "InteractionSet.buildbin-libdir/InteractionSet/libs//InteractionSet.so"