Metab 1.7.0
Raphael Aggio
| Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Metab | | Last Changed Rev: 117081 / Revision: 121152 | | Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016) |
| zin1 | Linux (Ubuntu 16.04 LTS) / x86_64 | NotNeeded | OK | [ OK ] | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | NotNeeded | OK | OK | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings Metab_1.7.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.4-bioc/meat/Metab.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Metab/DESCRIPTION’ ... OK
* this is package ‘Metab’ version ‘1.7.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Metab’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
MetReport: no visible global function definition for ‘read.csv’
MetReport: no visible global function definition for ‘write.csv’
MetReportNames: no visible global function definition for ‘read.csv’
MetReportNames: no visible global function definition for ‘write.csv’
buildLib: no visible global function definition for ‘read.csv’
buildLib: no visible global function definition for ‘txtProgressBar’
buildLib: no visible global function definition for ‘setTxtProgressBar’
buildLib: no visible global function definition for ‘write.csv’
htest : test.t : <anonymous>: no visible global function definition for
‘t.test’
htest : anova.t : <anonymous>: no visible global function definition
for ‘lm’
htest : anova.t: no visible binding for global variable ‘anova’
htest: no visible global function definition for ‘read.csv’
htest: no visible global function definition for ‘p.adjust’
htest: no visible global function definition for ‘write.csv’
normalizeByBiomass: no visible global function definition for
‘read.csv’
normalizeByBiomass: no visible global function definition for
‘write.csv’
normalizeByInternalStandard: no visible global function definition for
‘read.csv’
normalizeByInternalStandard: no visible global function definition for
‘select.list’
normalizeByInternalStandard: no visible global function definition for
‘write.csv’
removeFalsePositives: no visible global function definition for
‘read.csv’
removeFalsePositives: no visible global function definition for
‘write.csv’
Undefined global functions or variables:
anova lm p.adjust read.csv select.list setTxtProgressBar t.test
txtProgressBar write.csv
Consider adding
importFrom("stats", "anova", "lm", "p.adjust", "t.test")
importFrom("utils", "read.csv", "select.list", "setTxtProgressBar",
"txtProgressBar", "write.csv")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘test-all.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.4-bioc/meat/Metab.Rcheck/00check.log’
for details.