RareVariantVis 1.8.0
Tomasz Stokowy
| Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/RareVariantVis | | Last Changed Rev: 122710 / Revision: 128728 | | Last Changed Date: 2016-10-17 14:45:06 -0400 (Mon, 17 Oct 2016) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf RareVariantVis.buildbin-libdir RareVariantVis.Rcheck && mkdir RareVariantVis.buildbin-libdir RareVariantVis.Rcheck && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RareVariantVis.buildbin-libdir RareVariantVis_1.8.0.tar.gz >RareVariantVis.Rcheck\00install.out 2>&1 && cp RareVariantVis.Rcheck\00install.out RareVariantVis-install.out && C:\Users\biocbuild\bbs-3.4-bioc\R\bin\R.exe CMD check --library=RareVariantVis.buildbin-libdir --install="check:RareVariantVis-install.out" --force-multiarch --no-vignettes --timings RareVariantVis_1.8.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.4-bioc/meat/RareVariantVis.Rcheck'
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RareVariantVis/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RareVariantVis' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RareVariantVis' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
chromosomeVis: no visible global function definition for 'read.table'
chromosomeVis: no visible global function definition for 'rowRanges'
chromosomeVis: no visible global function definition for 'png'
chromosomeVis: no visible global function definition for 'points'
chromosomeVis: no visible global function definition for 'lines'
chromosomeVis: no visible global function definition for 'abline'
chromosomeVis: no visible global function definition for 'dev.off'
chromosomeVis: no visible global function definition for 'write.table'
multipleVis: no visible binding for global variable 'read.table'
multipleVis: no visible global function definition for 'write.table'
rareVariantVis: no visible global function definition for 'read.table'
trioVis: no visible global function definition for 'read.table'
trioVis: no visible global function definition for 'write.table'
Undefined global functions or variables:
abline dev.off lines png points read.table rowRanges write.table
Consider adding
importFrom("grDevices", "dev.off", "png")
importFrom("graphics", "abline", "lines", "points")
importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
chromosomeVis 34.2 5.49 39.87
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
chromosomeVis 35.36 5.28 40.64
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.4-bioc/meat/RareVariantVis.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'RareVariantVis' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
install for x64
* installing *source* package 'RareVariantVis' ...
** testing if installed package can be loaded
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
* MD5 sums
packaged installation of 'RareVariantVis' as RareVariantVis_1.8.0.zip
* DONE (RareVariantVis)