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BioC 3.4: BUILD BIN report for VariantAnnotation on tokay1

This page was generated on 2017-04-15 16:16:48 -0400 (Sat, 15 Apr 2017).

Package 1271/1296HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VariantAnnotation 1.20.3
Valerie Obenchain
Snapshot Date: 2017-04-14 17:17:13 -0400 (Fri, 14 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_4/madman/Rpacks/VariantAnnotation
Last Changed Rev: 127452 / Revision: 128728
Last Changed Date: 2017-03-15 22:03:50 -0400 (Wed, 15 Mar 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: VariantAnnotation
Version: 1.20.3
Command: cd VariantAnnotation.buildbin-libdir/VariantAnnotation && zip -r ../../VariantAnnotation_1.20.3.zip . & cd ../..
StartedAt: 2017-04-15 02:27:10 -0400 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 02:27:41 -0400 (Sat, 15 Apr 2017)
EllapsedTime: 31.1 seconds
RetCode: 0
Status:  OK  
PackageFile: VariantAnnotation_1.20.3.zip
PackageFileSize: 5.129 MiB

Command output

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###
### Running command:
###
###   cd VariantAnnotation.buildbin-libdir/VariantAnnotation && zip -r ../../VariantAnnotation_1.20.3.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: CITATION (284 bytes security) (deflated 57%)
  adding: DESCRIPTION (284 bytes security) (deflated 50%)
  adding: doc/ (324 bytes security) (stored 0%)
  adding: doc/filterVcf.pdf (284 bytes security) (deflated 12%)
  adding: doc/filterVcf.R (284 bytes security) (deflated 69%)
  adding: doc/filterVcf.Rnw (284 bytes security) (deflated 58%)
  adding: doc/index.html (284 bytes security) (deflated 69%)
  adding: doc/VariantAnnotation.pdf (284 bytes security) (deflated 17%)
  adding: doc/VariantAnnotation.R (284 bytes security) (deflated 77%)
  adding: doc/VariantAnnotation.Rnw (284 bytes security) (deflated 62%)
  adding: extdata/ (324 bytes security) (stored 0%)
  adding: extdata/chr22.vcf.gz (284 bytes security) (deflated 0%)
  adding: extdata/chr22.vcf.gz.tbi (284 bytes security) (deflated 3%)
  adding: extdata/chr7-sub.vcf.gz (284 bytes security) (deflated 0%)
  adding: extdata/chr7-sub.vcf.gz.tbi (284 bytes security) (deflated 5%)
  adding: extdata/ex2.vcf (284 bytes security) (deflated 53%)
  adding: extdata/gl_chr1.vcf (284 bytes security) (deflated 80%)
  adding: extdata/h1187-10k.vcf.gz (284 bytes security) (deflated 0%)
  adding: extdata/h1187-10k.vcf.gz.tbi (284 bytes security) (stored 0%)
  adding: extdata/hapmap_exome_chr22.vcf.gz (284 bytes security) (deflated 0%)
  adding: extdata/hapmap_exome_chr22.vcf.gz.tbi (284 bytes security) (deflated 4%)
  adding: extdata/structural.vcf (284 bytes security) (deflated 63%)
  adding: help/ (324 bytes security) (stored 0%)
  adding: help/aliases.rds (284 bytes security) (stored 0%)
  adding: help/AnIndex (284 bytes security) (deflated 86%)
  adding: help/paths.rds (284 bytes security) (stored 0%)
  adding: help/VariantAnnotation.rdb (284 bytes security) (deflated 1%)
  adding: help/VariantAnnotation.rdx (284 bytes security) (stored 0%)
  adding: html/ (324 bytes security) (stored 0%)
  adding: html/00Index.html (284 bytes security) (deflated 91%)
  adding: html/R.css (284 bytes security) (deflated 75%)
  adding: INDEX (284 bytes security) (deflated 65%)
  adding: libs/ (324 bytes security) (stored 0%)
  adding: libs/i386/ (324 bytes security) (stored 0%)
  adding: libs/i386/VariantAnnotation.dll (284 bytes security) (deflated 55%)
  adding: libs/x64/ (324 bytes security) (stored 0%)
  adding: libs/x64/VariantAnnotation.dll (284 bytes security) (deflated 53%)
  adding: MD5 (284 bytes security) (deflated 50%)
  adding: Meta/ (324 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (284 bytes security) (stored 0%)
  adding: Meta/links.rds (284 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (284 bytes security) (stored 0%)
  adding: Meta/package.rds (284 bytes security) (stored 0%)
  adding: Meta/Rd.rds (284 bytes security) (stored 0%)
  adding: Meta/vignette.rds (284 bytes security) (stored 0%)
  adding: NAMESPACE (284 bytes security) (deflated 63%)
  adding: NEWS (284 bytes security) (deflated 65%)
  adding: R/ (324 bytes security) (stored 0%)
  adding: R/VariantAnnotation (284 bytes security) (deflated 41%)
  adding: R/VariantAnnotation.rdb (284 bytes security) (deflated 25%)
  adding: R/VariantAnnotation.rdx (284 bytes security) (deflated 4%)
  adding: scripts/ (324 bytes security) (stored 0%)
  adding: scripts/test_Rplinkseq.R (284 bytes security) (deflated 68%)
  adding: unitTests/ (324 bytes security) (stored 0%)
  adding: unitTests/cases/ (324 bytes security) (stored 0%)
  adding: unitTests/cases/banded_gvcf.vcf (284 bytes security) (deflated 63%)
  adding: unitTests/cases/expand.vcf (284 bytes security) (deflated 68%)
  adding: unitTests/cases/fewer-FORMAT-than-GENO.vcf (284 bytes security) (deflated 45%)
  adding: unitTests/cases/FORMAT_header_no_SAMPLEs.vcf (284 bytes security) (deflated 47%)
  adding: unitTests/cases/missing-FORMAT-metadata-elt.vcf (284 bytes security) (deflated 42%)
  adding: unitTests/cases/mixedStructural.vcf (284 bytes security) (deflated 63%)
  adding: unitTests/cases/multiple_INFO_fields.vcf (284 bytes security) (deflated 30%)
  adding: unitTests/cases/negative_FORMAT_Number.vcf (284 bytes security) (deflated 64%)
  adding: unitTests/cases/no_FORMAT_column.vcf (284 bytes security) (deflated 31%)
  adding: unitTests/cases/no_GENO_row.vcf (284 bytes security) (deflated 43%)
  adding: unitTests/cases/no_INFO_header.vcf (284 bytes security) (deflated 36%)
  adding: unitTests/cases/unspecified_INFO_FORMAT_fields.vcf (284 bytes security) (deflated 51%)
  adding: unitTests/cases/VarScan_header.vcf (284 bytes security) (deflated 58%)
  adding: unitTests/test_expand-methods.R (284 bytes security) (deflated 70%)
  adding: unitTests/test_filterVcf.R (284 bytes security) (deflated 78%)
  adding: unitTests/test_genotypeToSnpMatrix.R (284 bytes security) (deflated 82%)
  adding: unitTests/test_isSNV.R (284 bytes security) (deflated 78%)
  adding: unitTests/test_locateVariants-methods.R (284 bytes security) (deflated 73%)
  adding: unitTests/test_predictCoding-methods.R (284 bytes security) (deflated 77%)
  adding: unitTests/test_readVcf-methods.R (284 bytes security) (deflated 75%)
  adding: unitTests/test_scanVcf.R (284 bytes security) (deflated 68%)
  adding: unitTests/test_ScanVcfParam-class.R (284 bytes security) (deflated 73%)
  adding: unitTests/test_SIFTandPolyPhen.R (284 bytes security) (deflated 66%)
  adding: unitTests/test_snpSummary.R (284 bytes security) (deflated 66%)
  adding: unitTests/test_summarizeVariants-methods.R (284 bytes security) (deflated 49%)
  adding: unitTests/test_VCF-class.R (284 bytes security) (deflated 78%)
  adding: unitTests/test_VRanges-class.R (284 bytes security) (deflated 76%)
  adding: unitTests/test_writeVcf-methods.R (284 bytes security) (deflated 79%)